Miyakogusa Predicted Gene

Lj6g3v1038860.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL B0BLB2_LOTJA 2077 89.5 92.9 (tr|B0BLB2) Ubiquitin carboxyl-terminal hydrolase OS=Lotus japonicus GN=CM0545.290.nc PE=3 SV=1
TAIR_pep AT5G06600.1 1835 79.4 87.4 | Symbols: UBP12 | ubiquitin-specific protease 12 | chr5:2019545-2027834 REVERSE LENGTH=1116
Medicago Medtr3g079840.1 2096 90.8 93.1 | ubiquitin carboxyl-terminal hydrolase-like protein | HC | chr3:36048639-36064377 | 20130731
Soybean Glyma02g43930.1 2063 89.3 92.6  
LJGI gnl|LJGI|TC67931 1766 99.8 99.8 homologue to UniRef100_A7QNS3 Cluster: Chromosome undetermined scaffold_134, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_134, whole genome shotgun sequence - Vitis vinifera (Grape), partial (23%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v1038860.1 length: 1119 aa.
IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2
method AccNumber shortName E-value location
Molecular Function GO:0004221 ubiquitin thiolesterase activity    
Biological Process GO:0006511 ubiquitin-dependent protein catabolic process    
HMMPfam PF00443 UCH 3e-54 198-521
ProfileScan PS50235 UCH_2_3 28.301 200-525
IPR002083 MATH
Molecular Function GO:0005515 protein binding    
HMMPfam PF00917 MATH 2.1e-17 62-180
HMMSmart SM00061 meprin 8.3e-17 57-161
ProfileScan PS50144 MATH 39.287 55-180
IPR008974 TRAF-like
Molecular Function GO:0005515 protein binding    
superfamily SSF49599 TRAF 3.6e-41 52-192
IPR018200 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site
Molecular Function GO:0004221 ubiquitin thiolesterase activity    
Biological Process GO:0006511 ubiquitin-dependent protein catabolic process    
PatternScan PS00972 UCH_2_1 NA 201-216
PatternScan PS00973 UCH_2_2 NA 440-457
IPR024729 Peptidase C19 domain
HMMPfam PF12436 USP7 2.9e-09 536-568
no_ID  
Coil coil coiled-coil NA 533-565
Gene3D G3DSA:2.20.210.10 no description 1.7e-29 313-385
Gene3D G3DSA:2.60.210.10 no description 6.3e-25 53-181
HMMPanther PTHR24006 FAMILY 0 127-790
HMMPanther PTHR24006:SF89 SUBFAMILY 0 127-790
Seg seg seg NA 442-456
541-564
superfamily SSF54001 Cysteine 1.4e-99 194-557
Wolf-PSORT
Lj6g3v1038860.1	nucl 10, cyto 4
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v1038860.1