Miyakogusa Predicted Gene

Lj6g3v1038840.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1NE34_SOYBN 697 64.2 73.4 (tr|I1NE34) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT3G43590.1 291 39.5 51.0 | Symbols: | zinc knuckle (CCHC-type) family protein | chr3:15509753-15512255 FORWARD LENGTH=551
Medicago Medtr8g468600.1 50.8 30.8 43.3 | zinc knuckle (CCHC-type) family protein | HC | chr8:24863982-24868612 | 20130731
Soybean Glyma20g11270.1 697 64.2 73.4  
LJGI gnl|LJGI|TC66528 1413 95.0 95.0 similar to UniRef100_A7PG94 Cluster: Chromosome chr6 scaffold_15, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr6 scaffold_15, whole genome shotgun sequence - Vitis vinifera (Grape), partial (21%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v1038840.1 length: 562 aa.
IPR001878 Zinc finger, CCHC-type
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0008270 zinc ion binding    
Gene3D G3DSA:4.10.60.10 no description 4.4e-11 176-212
216-259
267-301
302-339
HMMPfam PF00098 zf-CCHC 1.8e-07 175-190
197-211
217-232
323-339
HMMSmart SM00343 zinc 1e-05 175-191
197-213
216-232
243-259
294-310
323-339
ProfileScan PS50158 ZF_CCHC 10.938 176-189
217-232
198-211
295-310
324-339
superfamily SSF57756 Retrovirus 1.4e-07 281-343
162-215
217-263
no_ID  
Coil coil coiled-coil NA 123-144
HMMPanther PTHR23002 ZINC 1.9e-27 164-434
HMMPanther PTHR23002:SF11 CELLULAR 1.9e-27 164-434
Seg seg seg NA 66-72
103-110
Wolf-PSORT
Lj6g3v1038840.1	nucl 14
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v1038840.1