Miyakogusa Predicted Gene

Lj6g3v0948300.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1N146_SOYBN 1162 84.1 86.6 (tr|I1N146) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT5G19420.1 1063 76.3 82.9 | Symbols: | Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain | chr5:6547945-6552866 REVERSE LENGTH=1105
Medicago Medtr5g089900.1 1097 80.0 84.1 | regulator of chromosome condensation (RCC1) family protein | HC | chr5:39105074-39114126 | 20130731
Soybean Glyma18g14970.2 1136 84.4 87.0  
LJGI gnl|LJGI|TC81682 965 100.0 100.0 similar to UniRef100_A7PQZ5 Cluster: Chromosome chr6 scaffold_25, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr6 scaffold_25, whole genome shotgun sequence - Vitis vinifera (Grape), partial (37%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v0948300.1 length: 688 aa.
IPR000408 Regulator of chromosome condensation, RCC1
method AccNumber shortName E-value location
FPrintScan PR00633 RCCNDNSATION 7.8e-15 318-331
337-353
387-403
444-458
547-565
605-626
HMMPfam PF00415 RCC1 2.7e-15 335-383
386-438
443-490
505-554
557-606
611-658
PatternScan PS00626 RCC1_2 NA 321-331
428-438
480-490
ProfileScan PS50012 RCC1_3 14.705 273-334
335-386
387-441
442-493
506-557
558-609
610-661
IPR009091 Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II
Gene3D G3DSA:2.130.10.30 no description 3.4e-104 273-662
superfamily SSF50985 RCC1/BLIP-II 2e-99 273-665
IPR011993 Pleckstrin homology-like domain
Gene3D G3DSA:2.30.29.30 no description 1.5e-40 24-139
IPR024774 Pleckstrin homology domain, Mcp5-type
Molecular Function GO:0005515 protein binding    
Molecular Function GO:0005543 phospholipid binding    
Cellular Component GO:0005938 cell cortex    
Biological Process GO:0032065 cortical protein anchoring    
HMMPfam PF12814 Mcp5_PH 9.2e-06 27-135
no_ID  
HMMPanther PTHR22870 REGULATOR 0 43-688
HMMPanther PTHR22870:SF90 REGULATOR 0 43-688
Seg seg seg NA 1-15
220-241
252-274
279-290
497-505
superfamily SSF50729 PH 1.6e-27 24-135
Wolf-PSORT
Lj6g3v0948300.1	nucl 10.5, cyto_nucl 6, cysk 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v0948300.1