Miyakogusa Predicted Gene

Lj6g3v0936970.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1N132_SOYBN 698 79.1 86.7 (tr|I1N132) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT3G22330.1 598 62.7 78.6 | Symbols: PMH2, ATRH53 | putative mitochondrial RNA helicase 2 | chr3:7892641-7895145 FORWARD LENGTH=616
Medicago Medtr3g449250.2 680 75.4 82.9 | DEAD-box ATP-dependent RNA helicase-like protein | HC | chr3:16688391-16681206 | 20130731
Soybean Glyma18g14670.1 697 79.1 86.7  
LJGI gnl|LJGI|TC60837 266 82.6 82.6 similar to UniRef100_Q9LUW6 Cluster: DEAD-box ATP-dependent RNA helicase 9; n=1; Arabidopsis thaliana|Rep: DEAD-box ATP-dependent RNA helicase 9 - Arabidopsis thaliana (Mouse-ear cress), partial (30%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v0936970.1 length: 563 aa.
IPR001650 Helicase, C-terminal
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0004386 helicase activity    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00271 Helicase_C 2.5e-25 359-434
HMMSmart SM00490 helicase 1.6e-31 354-434
ProfileScan PS51194 HELICASE_CTER 22.554 329-478
IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0008026 ATP-dependent helicase activity    
HMMPfam PF00270 DEAD 6.7e-47 120-288
IPR014001 Helicase, superfamily 1/2, ATP-binding domain
HMMSmart SM00487 DEAD-like 1.9e-58 114-317
ProfileScan PS51192 HELICASE_ATP_BIND_1 33.150 126-300
IPR014014 RNA helicase, DEAD-box type, Q motif
ProfileScan PS51195 Q_MOTIF 8.162 95-123
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 2.2e-72 168-457
no_ID  
Gene3D G3DSA:3.40.50.300 no description 3e-47 89-304
305-466
HMMPanther PTHR24031 FAMILY 6.2e-221 87-561
HMMPanther PTHR24031:SF107HELICASE CONSERVED 6.2e-221 87-561
Seg seg seg NA 2-23
428-439
479-512
522-551
Wolf-PSORT
Lj6g3v0936970.1	mito 9, chlo 5
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v0936970.1