Miyakogusa Predicted Gene

Lj6g3v0935870.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1N131_SOYBN 741 86.5 90.6 (tr|I1N131) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT4G23820.1 627 74.3 84.1 | Symbols: | Pectin lyase-like superfamily protein | chr4:12397217-12400050 REVERSE LENGTH=444
Medicago Medtr3g449590.1 720 83.3 89.3 | polygalacturonase/glycoside hydrolase family protein | HC | chr3:16895715-16889169 | 20130731
Soybean Glyma18g14640.1 741 86.5 90.6  
LJGI gnl|LJGI|TC75627 1078 98.8 98.8 similar to UniRef100_A7QN93 Cluster: Chromosome chr2 scaffold_132, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr2 scaffold_132, whole genome shotgun sequence - Vitis vinifera (Grape), partial (50%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v0935870.1 length: 440 aa.
IPR000743 Glycoside hydrolase, family 28
method AccNumber shortName E-value location
Molecular Function GO:0004650 polygalacturonase activity    
Biological Process GO:0005975 carbohydrate metabolic process    
HMMPfam PF00295 Glyco_hydro_28 3.6e-39 132-412
IPR006626 Parallel beta-helix repeat
HMMSmart SM00710 Parallel 6.7e+03 202-228
229-261
263-284
290-311
319-340
353-373
IPR011050 Pectin lyase fold/virulence factor
superfamily SSF51126 Pectin 1.6e-100 15-425
IPR012334 Pectin lyase fold
Gene3D G3DSA:2.160.20.10 no description 3.7e-107 30-414
no_ID  
HMMPanther PTHR31339 FAMILY 5.1e-181 25-426
HMMPanther PTHR31339:SF0 SUBFAMILY 5.1e-181 25-426
Seg seg seg NA 2-12
119-128
177-188
Wolf-PSORT
Lj6g3v0935870.1	chlo 4, cyto 3, nucl 2, vacu 2, cysk 2, chlo_mito 2, cysk_nucl 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v0935870.1