Miyakogusa Predicted Gene

Lj6g3v0933510.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7K6H0_MEDTR 900 80.5 87.2 (tr|G7K6H0) E3 ubiquitin-protein ligase synoviolin OS=Medicago truncatula GN=MTR_5g007710 PE=4 SV=1
TAIR_pep AT3G16090.1 670 64.4 76.1 | Symbols: | RING/U-box superfamily protein | chr3:5456513-5458694 FORWARD LENGTH=492
Medicago Medtr5g007710.1 900 80.5 87.2 | ubiquitin-protein ligase synoviolin | HC | chr5:1471216-1474618 | 20130731
Soybean Glyma11g01330.3 875 80.8 86.4  
LJGI gnl|LJGI|TC57379 1489 100.0 100.0 similar to UniRef100_A7PBD1 Cluster: Chromosome chr16 scaffold_10, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr16 scaffold_10, whole genome shotgun sequence - Vitis vinifera (Grape), partial (49%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v0933510.1 length: 549 aa.
IPR001841 Zinc finger, RING-type
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
Molecular Function GO:0008270 zinc ion binding    
HMMPfam PF13639 zf-RING_2 4.8e-12 291-331
HMMSmart SM00184 Ring 0.00076 292-329
ProfileScan PS50089 ZF_RING_2 12.622 292-330
IPR013083 Zinc finger, RING/FYVE/PHD-type
Gene3D G3DSA:3.30.40.10 no description 3.4e-15 281-334
no_ID  
HMMPanther PTHR12477 SYNOVIOLIN-RELATED 1.8e-245 1-392
HMMPanther PTHR12477:SF10 SYNOVIOLIN-RELATED 1.8e-245 1-392
Seg seg seg NA 387-392
530-540
superfamily SSF57850 RING/U-box 1e-21 266-336
Wolf-PSORT
Lj6g3v0933510.1	plas 6, vacu 5, E.R. 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v0933510.1