Miyakogusa Predicted Gene

Lj6g3v0931320.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr6

Full length sequence(26885540 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL G7IQA8_MEDTR 583 68.6 79.6 (tr|G7IQA8) Heat shock protein OS=Medicago truncatula GN=MTR_2g040350 PE=1 SV=1

TAIR_pep AT5G17680.1 270 37.8 59.0 | Symbols: | disease resistance protein (TIR-NBS-LRR class), putative | chr5:5822999-5827153 FORWARD LENGTH=1294

Medicago Medtr2g040160.1 583 68.4 79.6 | animal HSPA9 nucleotide-binding domain protein | LC | chr2:17616530-17622587 | 20130731

Soybean Glyma12g36880.1 523 67.1 77.3

LJGI gnl|LJGI|DC599911 452 96.8 96.8 weakly similar to UniRef100_A7PQB6 Cluster: Chromosome chr18 scaffold_24, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr18 scaffold_24, whole genome shotgun sequence - Vitis vinifera (Grape), partial (12%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj6g3v0931320.1 length: 410 aa.

IPR000157 Toll/interleukin-1 receptor homology (TIR) domain

method AccNumber shortName E-value location

Molecular Function GO:0005515 protein binding

Biological Process GO:0007165 signal transduction

HMMPfam PF01582 TIR 3.7e-05 2-57

superfamily SSF52200 Toll/Interleukin 5.7e-08 1-66

IPR000767 Disease resistance protein

Biological Process GO:0006952 defense response

FPrintScan PR00364 DISEASERSIST 4.1e-19 126-141
202-216
294-308

IPR002182 NB-ARC

Molecular Function GO:0043531 ADP binding

HMMPfam PF00931 NB-ARC 3.2e-49 108-370

IPR027417 P-loop containing nucleoside triphosphate hydrolase

superfamily SSF52540 P-loop 3.3e-31 84-331

no_ID

Gene3D G3DSA:3.40.50.300 no description 1e-11 117-276

HMMPanther PTHR11017 LEUCINE-RICH 4.7e-117 1-407

HMMPanther PTHR11017:SF130DISEASE RESISTANCE 4.7e-117 1-407

Seg seg seg NA 104-124
198-212

superfamily SSF46785 "Winged 2.4e-14 329-409

Wolf-PSORT

Lj6g3v0931320.1 cyto 7, chlo 2, nucl 2, mito 2, chlo_mito 2

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj6g3v0931320.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	G7IQA8_MEDTR	583	68.6	79.6	(tr\|G7IQA8) Heat shock protein OS=Medicago truncatula GN=MTR_2g040350 PE=1 SV=1
TAIR_pep	AT5G17680.1	270	37.8	59.0	\| Symbols: \| disease resistance protein (TIR-NBS-LRR class), putative \| chr5:5822999-5827153 FORWARD LENGTH=1294
Medicago	Medtr2g040160.1	583	68.4	79.6	\| animal HSPA9 nucleotide-binding domain protein \| LC \| chr2:17616530-17622587 \| 20130731
Soybean	Glyma12g36880.1	523	67.1	77.3
LJGI	gnl\|LJGI\|DC599911	452	96.8	96.8	weakly similar to UniRef100_A7PQB6 Cluster: Chromosome chr18 scaffold_24, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr18 scaffold_24, whole genome shotgun sequence - Vitis vinifera (Grape), partial (12%)

IPR000157	Toll/interleukin-1 receptor homology (TIR) domain
Lj6g3v0931320.1				length: 410 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0005515	protein binding
Biological Process	GO:0007165	signal transduction
HMMPfam	PF01582	TIR	3.7e-05	2-57
superfamily	SSF52200	Toll/Interleukin	5.7e-08	1-66
IPR000767	Disease resistance protein
Biological Process	GO:0006952	defense response
FPrintScan	PR00364	DISEASERSIST	4.1e-19	126-141 202-216 294-308
IPR002182	NB-ARC
Molecular Function	GO:0043531	ADP binding
HMMPfam	PF00931	NB-ARC	3.2e-49	108-370
IPR027417	P-loop containing nucleoside triphosphate hydrolase
superfamily	SSF52540	P-loop	3.3e-31	84-331
no_ID
Gene3D	G3DSA:3.40.50.300	no description	1e-11	117-276
HMMPanther	PTHR11017	LEUCINE-RICH	4.7e-117	1-407
HMMPanther	PTHR11017:SF130DISEASE	RESISTANCE	4.7e-117	1-407
Seg	seg	seg	NA	104-124 198-212
superfamily	SSF46785	"Winged	2.4e-14	329-409