Miyakogusa Predicted Gene

Lj6g3v0927490.2
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7IXE7_MEDTR 1504 88.5 90.8 (tr|G7IXE7) Vacuolar protein sorting-associated protein-like protein OS=Medicago truncatula GN=MTR_3g046640 PE=4 SV=1
TAIR_pep AT2G38020.1 1244 71.9 81.9 | Symbols: VCL1, MAN, EMB258 | vacuoleless1 (VCL1) | chr2:15910098-15914190 REVERSE LENGTH=858
Medicago Medtr3g046640.1 1509 89.2 91.5 | vacuolar protein sorting-associated-like protein | HC | chr3:15444720-15430855 | 20130731
Soybean Glyma08g42080.1 1425 85.1 88.3  
LJGI gnl|LJGI|TC64254 2181 99.7 99.7 homologue to UniRef100_A7PJU0 Cluster: Chromosome chr12 scaffold_18, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr12 scaffold_18, whole genome shotgun sequence - Vitis vinifera (Grape), partial (47%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v0927490.2 length: 820 aa.
IPR006925 Vps16, C-terminal
method AccNumber shortName E-value location
Cellular Component GO:0005737 cytoplasm    
Biological Process GO:0006886 intracellular protein transport    
HMMPfam PF04840 Vps16_C 2.8e-66 513-818
IPR006926 Vps16, N-terminal
Cellular Component GO:0005737 cytoplasm    
Biological Process GO:0006886 intracellular protein transport    
HMMPfam PF04841 Vps16_N 2e-81 8-416
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 0.00022 66-255
IPR016534 Vacuolar protein sorting-associated protein 16
Biological Process GO:0006886 intracellular protein transport    
HMMPIR PIRSF007949 Vacuolar 0 1-820
HMMPanther PTHR12811:SF0 SUBFAMILY 0 2-820
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
superfamily SSF50978 WD40 1.2e-09 9-287
no_ID  
HMMPanther PTHR12811 VACUOLAR 0 2-820
Seg seg seg NA 193-216
499-509
802-814
Wolf-PSORT
Lj6g3v0927490.2	chlo 4, cyto 4, mito 3, vacu 1, pero 1, cysk 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v0927490.2