Miyakogusa Predicted Gene

Lj6g3v0925880.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I3S977_LOTJA 425 93.2 93.2 (tr|I3S977) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
TAIR_pep AT2G42780.1 214 53.6 73.4 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684); Has 187 Blast hits to 186 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 29; Plants - 38; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). | chr2:17801037-17802646 FORWARD LENGTH=293
Medicago Medtr3g048940.1 314 76.0 87.5 | RNA polymerase II transcription factor SIII (elongin) subunit A | HC | chr3:18181628-18178515 | 20130731
Soybean Glyma08g42410.1 330 78.1 91.5  
LJGI gnl|LJGI|TC63765 1285 99.0 99.0 weakly similar to UniRef100_A7PJP3 Cluster: Chromosome chr12 scaffold_18, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr12 scaffold_18, whole genome shotgun sequence - Vitis vinifera (Grape), partial (90%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v0925880.1 length: 222 aa.
IPR010684 RNA polymerase II transcription factor SIII, subunit A
method AccNumber shortName E-value location
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Cellular Component GO:0016021 integral to membrane    
HMMPfam PF06881 Elongin_A 6e-23 31-139
no_ID  
Coil coil coiled-coil NA 111-135
HMMPanther PTHR15141 TRANSCRIPTION 2.6e-40 9-215
HMMPanther PTHR15141:SF14 ELONGIN-A-RELATED 2.6e-40 9-215
Seg seg seg NA 199-213
Wolf-PSORT
Lj6g3v0925880.1	nucl 8, plas 3, chlo 2, cysk_plas 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v0925880.1