Miyakogusa Predicted Gene

Lj6g3v0896480.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr6

Full length sequence(26885540 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I1N0T6_SOYBN 866 90.2 94.9 (tr|I1N0T6) Uncharacterized protein OS=Glycine max PE=3 SV=2

TAIR_pep AT4G27070.1 785 82.6 90.0 | Symbols: TSB2 | tryptophan synthase beta-subunit 2 | chr4:13586564-13588619 FORWARD LENGTH=475

Medicago Medtr3g049410.1 842 88.3 93.0 | tryptophan synthase beta type 2 | HC | chr3:18406693-18402343 | 20130731

Soybean Glyma18g12090.1 865 90.0 94.7

LJGI gnl|LJGI|TC59521 1382 100.0 100.0 homologue to UniRef100_Q5KT13 Cluster: Tryptophan synthase beta subunit; n=1; Persicaria tinctoria|Rep: Tryptophan synthase beta subunit - Persicaria tinctoria, partial (34%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj6g3v0896480.1 length: 470 aa.

IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily

method AccNumber shortName E-value location

HMMPfam PF00291 PALP 3.4e-41 145-455

superfamily SSF53686 Tryptophan 6e-164 74-468

IPR006653 Tryptophan synthase, beta chain, conserved site

Molecular Function GO:0004834 tryptophan synthase activity

Biological Process GO:0006568 tryptophan metabolic process

PatternScan PS00168 TRP_SYNTHASE_BETA NA 158-172

IPR006654 Tryptophan synthase, beta chain

Molecular Function GO:0004834 tryptophan synthase activity

Biological Process GO:0006568 tryptophan metabolic process

HMMPanther PTHR10314:SF3 TRYPTOPHAN 4.7e-255 48-469

HMMTigr TIGR00263 trpB: 3.1e-188 79-467

IPR023026 Tryptophan synthase beta chain/beta chain-like

Biological Process GO:0000162 tryptophan biosynthetic process

Molecular Function GO:0004834 tryptophan synthase activity

HAMAP MF_00133 Trp_synth_beta 53.156 74-468

no_ID

Gene3D G3DSA:3.40.50.1100 no description 5.3e-95 173-254
255-469

HMMPanther PTHR10314 SER/THR 4.7e-255 48-469

Wolf-PSORT

Lj6g3v0896480.1 chlo 9, mito 4

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj6g3v0896480.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I1N0T6_SOYBN	866	90.2	94.9	(tr\|I1N0T6) Uncharacterized protein OS=Glycine max PE=3 SV=2
TAIR_pep	AT4G27070.1	785	82.6	90.0	\| Symbols: TSB2 \| tryptophan synthase beta-subunit 2 \| chr4:13586564-13588619 FORWARD LENGTH=475
Medicago	Medtr3g049410.1	842	88.3	93.0	\| tryptophan synthase beta type 2 \| HC \| chr3:18406693-18402343 \| 20130731
Soybean	Glyma18g12090.1	865	90.0	94.7
LJGI	gnl\|LJGI\|TC59521	1382	100.0	100.0	homologue to UniRef100_Q5KT13 Cluster: Tryptophan synthase beta subunit; n=1; Persicaria tinctoria\|Rep: Tryptophan synthase beta subunit - Persicaria tinctoria, partial (34%)

IPR001926	Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily
Lj6g3v0896480.1				length: 470 aa.
method	AccNumber	shortName	E-value	location
HMMPfam	PF00291	PALP	3.4e-41	145-455
superfamily	SSF53686	Tryptophan	6e-164	74-468
IPR006653	Tryptophan synthase, beta chain, conserved site
Molecular Function	GO:0004834	tryptophan synthase activity
Biological Process	GO:0006568	tryptophan metabolic process
PatternScan	PS00168	TRP_SYNTHASE_BETA	NA	158-172
IPR006654	Tryptophan synthase, beta chain
Molecular Function	GO:0004834	tryptophan synthase activity
Biological Process	GO:0006568	tryptophan metabolic process
HMMPanther	PTHR10314:SF3	TRYPTOPHAN	4.7e-255	48-469
HMMTigr	TIGR00263	trpB:	3.1e-188	79-467
IPR023026	Tryptophan synthase beta chain/beta chain-like
Biological Process	GO:0000162	tryptophan biosynthetic process
Molecular Function	GO:0004834	tryptophan synthase activity
HAMAP	MF_00133	Trp_synth_beta	53.156	74-468
no_ID
Gene3D	G3DSA:3.40.50.1100	no description	5.3e-95	173-254 255-469
HMMPanther	PTHR10314	SER/THR	4.7e-255	48-469