Miyakogusa Predicted Gene

Lj6g3v0873250.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr6

Full length sequence(26885540 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL B7FHQ3_MEDTR 321 65.2 70.4 (tr|B7FHQ3) Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1

TAIR_pep AT1G50710.1 229 54.4 63.5 | Symbols: | unknown protein; Has 109 Blast hits to 109 proteins in 44 species: Archae - 0; Bacteria - 2; Metazoa - 61; Fungi - 8; Plants - 36; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:18784719-18787615 REVERSE LENGTH=423

Medicago Medtr3g052180.1 320 65.2 70.8 | SKIP interacting protein | HC | chr3:20644366-20637161 | 20130731

Soybean Glyma18g11000.1 320 66.8 70.8

LJGI gnl|LJGI|TC59825 948 100.0 100.0 similar to UniRef100_A7P0Q3 Cluster: Chromosome chr19 scaffold_4, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr19 scaffold_4, whole genome shotgun sequence - Vitis vinifera (Grape), partial (46%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj6g3v0873250.1 length: 253 aa.

no_ID

method AccNumber shortName E-value location

BlastProDom PD360721 Q8GYM3_ARATH_Q8GYM3; 3e-22 157-252

Coil coil coiled-coil NA 202-223

Seg seg seg NA 71-105
179-192
201-215

Wolf-PSORT

Lj6g3v0873250.1 nucl 6, nucl_plas 4.5, cyto 4, chlo 1, plas 1, extr 1, cysk 1

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj6g3v0873250.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	B7FHQ3_MEDTR	321	65.2	70.4	(tr\|B7FHQ3) Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1
TAIR_pep	AT1G50710.1	229	54.4	63.5	\| Symbols: \| unknown protein; Has 109 Blast hits to 109 proteins in 44 species: Archae - 0; Bacteria - 2; Metazoa - 61; Fungi - 8; Plants - 36; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). \| chr1:18784719-18787615 REVERSE LENGTH=423
Medicago	Medtr3g052180.1	320	65.2	70.8	\| SKIP interacting protein \| HC \| chr3:20644366-20637161 \| 20130731
Soybean	Glyma18g11000.1	320	66.8	70.8
LJGI	gnl\|LJGI\|TC59825	948	100.0	100.0	similar to UniRef100_A7P0Q3 Cluster: Chromosome chr19 scaffold_4, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr19 scaffold_4, whole genome shotgun sequence - Vitis vinifera (Grape), partial (46%)

no_ID
Lj6g3v0873250.1				length: 253 aa.
method	AccNumber	shortName	E-value	location
BlastProDom	PD360721	Q8GYM3_ARATH_Q8GYM3;	3e-22	157-252
Coil	coil	coiled-coil	NA	202-223
Seg	seg	seg	NA	71-105 179-192 201-215