Miyakogusa Predicted Gene
- Lj6g3v0856580.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr6
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1KYB1_SOYBN |
457 |
87.3 |
95.5 |
(tr|I1KYB1) Uncharacterized protein OS=Glycine max PE=3 SV=1 |
| TAIR_pep |
AT4G26860.1 |
402 |
78.2 |
88.1 |
| Symbols: | Predicted pyridoxal phosphate-dependent enzyme, YBL036C type | chr4:13503291-13504693 REVERSE LENGTH=244 |
| Medicago |
Medtr3g053230.1 |
450 |
88.9 |
92.6 |
| proline synthetase associated protein | HC | chr3:21149543-21142887 | 20130731 |
| Soybean |
Glyma08g43230.1 |
457 |
87.3 |
95.5 |
|
| LJGI |
gnl|LJGI|TC60978 |
1469 |
100.0 |
100.0 |
similar to UniRef100_A7P0L6 Cluster: Chromosome chr19 scaffold_4, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr19 scaffold_4, whole genome shotgun sequence - Vitis vinifera (Grape), partial (96%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj6g3v0856580.1 |
length: 245 aa. |
| IPR001608 |
Alanine racemase, N-terminal |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPfam |
PF01168 |
Ala_racemase_N |
3.6e-43 |
17-238 |
| IPR011078 |
Uncharacterised protein family UPF0001 |
| HMMPIR |
PIRSF004848 |
Predicted |
8.3e-104 |
1-242 |
| HMMPanther |
PTHR10146 |
PROLINE |
3.4e-123 |
1-243 |
| HMMTigr |
TIGR00044 |
TIGR00044: |
4.1e-62 |
18-238 |
| PatternScan |
PS01211 |
UPF0001 |
NA |
82-96 |
| no_ID |
|
| Gene3D |
G3DSA:3.20.20.10 |
no description |
7.2e-98 |
13-242 |
| superfamily |
SSF51419 |
PLP-binding |
2e-75 |
11-236 |
- Wolf-PSORT
Lj6g3v0856580.1 cyto 4, plas 3, cyto_nucl 3, chlo 2, nucl 2, vacu 2, cyto_pero 2, cysk_plas 2, cyto_E.R. 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj6g3v0856580.1 |
|