Miyakogusa Predicted Gene

Lj6g3v0820220.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr6

Full length sequence(26885540 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL D7UPM9_LOTJA 613 100.0 100.0 (tr|D7UPM9) SEC13 family protein OS=Lotus japonicus GN=Sec13-like 1 PE=2 SV=1

TAIR_pep AT2G30050.1 526 83.4 91.4 | Symbols: | transducin family protein / WD-40 repeat family protein | chr2:12825540-12826448 FORWARD LENGTH=302

Medicago Medtr3g054090.1 578 92.4 96.3 | transducin/WD-like repeat-protein | HC | chr3:21448066-21445525 | 20130731

Soybean Glyma18g10340.1 589 94.7 97.3

LJGI gnl|LJGI|TC62421 1800 100.0 100.0 homologue to UniRef100_A7QLK1 Cluster: Chromosome undetermined scaffold_119, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_119, whole genome shotgun sequence - Vitis vinifera (Grape), complete

A list of protein families, domains and functional sites (searches in InterPro)

Lj6g3v0820220.1 length: 301 aa.

IPR001680 WD40 repeat

method AccNumber shortName E-value location

Molecular Function GO:0005515 protein binding

HMMPfam PF00400 WD40 2.4999999999999992E-8 6-37
47-85
96-131
143-191
203-240

HMMSmart SM00320 WD40 5.299999485089854E-4 2-39
44-85
91-132
138-191
198-241
247-286

ProfileScan PS50082 WD_REPEATS_2 0.0 7-48
51-85
205-242

IPR015943 WD40/YVTN repeat-like-containing domain

Molecular Function GO:0005515 protein binding

Gene3D G3DSA:2.130.10.10G3DSA:2.130.10.10 T[5-298] 7.700000000487894E-56

IPR017986 WD40-repeat-containing domain

Molecular Function GO:0005515 protein binding

ProfileScan PS50294 WD_REPEATS_REGION 0.0 7-295

superfamily SSF50978 WD40_like 1.999996360345208E-45 8-286

IPR020472 G-protein beta WD-40 repeat

FPrintScan PR00320 GPROTEINBRPT 3.000000679928713E-5 72-86
178-192
228-242

no_ID

HMMPanther PTHR11024 PTHR11024 0.0 1-301

Wolf-PSORT

Lj6g3v0820220.1 chlo 7, cyto 4, nucl 3

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj6g3v0820220.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	D7UPM9_LOTJA	613	100.0	100.0	(tr\|D7UPM9) SEC13 family protein OS=Lotus japonicus GN=Sec13-like 1 PE=2 SV=1
TAIR_pep	AT2G30050.1	526	83.4	91.4	\| Symbols: \| transducin family protein / WD-40 repeat family protein \| chr2:12825540-12826448 FORWARD LENGTH=302
Medicago	Medtr3g054090.1	578	92.4	96.3	\| transducin/WD-like repeat-protein \| HC \| chr3:21448066-21445525 \| 20130731
Soybean	Glyma18g10340.1	589	94.7	97.3
LJGI	gnl\|LJGI\|TC62421	1800	100.0	100.0	homologue to UniRef100_A7QLK1 Cluster: Chromosome undetermined scaffold_119, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome undetermined scaffold_119, whole genome shotgun sequence - Vitis vinifera (Grape), complete

IPR001680	WD40 repeat
Lj6g3v0820220.1				length: 301 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0005515	protein binding
HMMPfam	PF00400	WD40	2.4999999999999992E-8	6-37 47-85 96-131 143-191 203-240
HMMSmart	SM00320	WD40	5.299999485089854E-4	2-39 44-85 91-132 138-191 198-241 247-286
ProfileScan	PS50082	WD_REPEATS_2	0.0	7-48 51-85 205-242
IPR015943	WD40/YVTN repeat-like-containing domain
Molecular Function	GO:0005515	protein binding
Gene3D	G3DSA:2.130.10.10G3DSA:2.130.10.10	T[5-298]	7.700000000487894E-56
IPR017986	WD40-repeat-containing domain
Molecular Function	GO:0005515	protein binding
ProfileScan	PS50294	WD_REPEATS_REGION	0.0	7-295
superfamily	SSF50978	WD40_like	1.999996360345208E-45	8-286
IPR020472	G-protein beta WD-40 repeat
FPrintScan	PR00320	GPROTEINBRPT	3.000000679928713E-5	72-86 178-192 228-242
no_ID
HMMPanther	PTHR11024	PTHR11024	0.0	1-301