Miyakogusa Predicted Gene
- Lj6g3v0818990.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr6
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I3SKW8_LOTJA |
424 |
99.5 |
99.5 |
(tr|I3SKW8) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1 |
| TAIR_pep |
AT1G16240.2 |
313 |
72.5 |
85.3 |
| Symbols: SYP51, ATSYP51 | syntaxin of plants 51 | chr1:5555183-5556340 REVERSE LENGTH=232 |
| Medicago |
Medtr3g055200.1 |
401 |
92.8 |
98.6 |
| syntaxin of plants protein | HC | chr3:21692668-21694888 | 20130731 |
| Soybean |
Glyma18g10060.2 |
399 |
92.8 |
96.6 |
|
| LJGI |
gnl|LJGI|TC58482 |
1366 |
100.0 |
100.0 |
similar to UniRef100_Q94KK7 Cluster: Syntaxin-52; n=1; Arabidopsis thaliana|Rep: Syntaxin-52 - Arabidopsis thaliana (Mouse-ear cress), partial (98%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj6g3v0818990.1 |
length: 229 aa. |
| IPR000727 |
Target SNARE coiled-coil domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0005515 |
protein binding |
|
|
| HMMPfam |
PF05739 |
SNARE |
1.4e-11 |
138-199 |
| HMMSmart |
SM00397 |
Helical |
8.2e-05 |
128-195 |
| ProfileScan |
PS50192 |
T_SNARE |
13.176 |
133-195 |
| no_ID |
|
| Gene3D |
G3DSA:1.20.5.110 |
no description |
9.3e-18 |
133-195 |
| HMMPanther |
PTHR12380 |
SYNTAXIN |
9.7e-139 |
1-225 |
| HMMPanther |
PTHR12380:SF7 |
SYNTAXIN |
9.7e-139 |
1-225 |
| Seg |
seg |
seg |
NA |
209-226 |
- Wolf-PSORT
Lj6g3v0818990.1 golg 5, cyto 3, golg_plas 3, vacu 2, E.R. 2, E.R._vacu 2, cyto_plas 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj6g3v0818990.1 |
|