Miyakogusa Predicted Gene
- Lj6g3v0814370.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr6
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I3T2X7_LOTJA |
223 |
100.0 |
100.0 |
(tr|I3T2X7) Uncharacterized protein OS=Lotus japonicus PE=4 SV=1 |
| TAIR_pep |
AT2G30410.2 |
176 |
78.2 |
89.1 |
| Symbols: KIS | tubulin folding cofactor A (KIESEL) | chr2:12959812-12960552 FORWARD LENGTH=113 |
| Medicago |
Medtr5g094290.1 |
191 |
84.1 |
91.2 |
| tubulin folding cofactor A | HC | chr5:41197987-41186098 | 20130731 |
| Soybean |
Glyma12g34820.2 |
189 |
85.5 |
90.9 |
|
| LJGI |
gnl|LJGI|TC65447 |
684 |
100.0 |
100.0 |
similar to UniRef100_A5CFZ2 Cluster: Tubulin folding cofactor A; n=1; Hordeum vulgare subsp. vulgare|Rep: Tubulin folding cofactor A - Hordeum vulgare var. distichum (Two-rowed barley), partial (77%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj6g3v0814370.1 |
length: 113 aa. |
| IPR004226 |
Tubulin binding cofactor A |
| method |
AccNumber |
shortName |
E-value |
location |
| Cellular Component |
GO:0005874 |
microtubule |
|
|
| Biological Process |
GO:0007021 |
tubulin complex assembly |
|
|
| Molecular Function |
GO:0051082 |
unfolded protein binding |
|
|
| BlastProDom |
PD010430 |
Q547H3_ARATH_Q547H3; |
2e-34 |
10-90 |
| HMMPanther |
PTHR21500 |
TUBULIN-SPECIFIC |
3.6e-40 |
1-113 |
| HMMPfam |
PF02970 |
TBCA |
2.4e-29 |
6-93 |
| superfamily |
SSF46988 |
Tubulin |
8.9e-28 |
2-106 |
| no_ID |
|
| Coil |
coil |
coiled-coil |
NA |
66-90 |
| Gene3D |
G3DSA:1.20.58.90 |
no description |
6.6e-35 |
2-106 |
| HMMPanther |
PTHR21500:SF0 |
SUBFAMILY |
3.6e-40 |
1-113 |
- Wolf-PSORT
Lj6g3v0814370.1 chlo 9, extr 2, nucl 1, cyto 1, mito 1, cyto_nucl 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj6g3v0814370.1 |
|