| database | Accession | Score | Iden (%) |
Posi (%) |
Definition |
|---|---|---|---|---|---|
| TrEMBL | I1N0A5_SOYBN | 249 | 53.3 | 58.4 | (tr|I1N0A5) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep | AT5G55670.2 | 165 | 75.8 | 84.8 | | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:22544669-22546801 REVERSE LENGTH=585 |
| Medicago | Medtr3g058990.1 | 159 | 76.0 | 84.4 | | RNA recognition motif, a.k.a. RRM, RBD protein | HC | chr3:23580379-23576089 | 20130731 |
| Soybean | Glyma18g08610.1 | 249 | 53.3 | 58.4 | |
| LJGI | gnl|LJGI|FS322912 | 182 | 88.4 | 88.4 | similar to UniRef100_Q651Z0 Cluster: RNA-binding protein-like; n=1; Oryza sativa Japonica Group|Rep: RNA-binding protein-like - Oryza sativa subsp. japonica (Rice), partial (6%) |
| Lj6g3v0754260.1 | length: 477 aa. | |||
| IPR000504 | RNA recognition motif domain | |||
|---|---|---|---|---|
| method | AccNumber | shortName | E-value | location |
| Molecular Function | GO:0003676 | nucleic acid binding | ||
| HMMPfam | PF00076 | RRM_1 | 1.8e-14 | 223-292 |
| HMMSmart | SM00360 | RNA | 1.4e-18 | 222-295 |
| ProfileScan | PS50102 | RRM | 13.277 | 221-299 |
| IPR012677 | Nucleotide-binding, alpha-beta plait | |||
| Molecular Function | GO:0000166 | nucleotide binding | ||
| Gene3D | G3DSA:3.30.70.330 | no description | 2.3e-21 | 345-346 |
| no_ID | ||||
| HMMPanther | PTHR24012 | FAMILY | 4.9e-92 | 1-476 |
| HMMPanther | PTHR24012:SF162RNA | RECOGNITION | 4.9e-92 | 1-476 |
| Seg | seg | seg | NA | 31-44 63-78 79-103 111-121 144-226 326-339 345-374 379-400 446-463 |
| superfamily | SSF54928 | RNA-binding | 6.8e-23 | 219-331 |
Lj6g3v0754260.1 cyto 9, chlo 3, nucl 2
| entry_id | prediction | score | sppta | spptna | fp | profile |
|---|---|---|---|---|---|---|
| Lj6g3v0754260.1 | Not targeted | -25.012 | -4.806 | -3.469 | 20.76% | -16.737 |