Miyakogusa Predicted Gene

Lj6g3v0727740.2
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1N089_SOYBN 654 84.8 93.0 (tr|I1N089) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT1G60620.1 518 67.9 81.4 | Symbols: ATRPAC43, RPAC43 | RNA polymerase I subunit 43 | chr1:22331225-22333370 FORWARD LENGTH=385
Medicago Medtr3g060690.1 599 77.0 87.1 | DNA-directed RNA polymerase | HC | chr3:23809029-23804183 | 20130731
Soybean Glyma08g44480.1 652 84.0 92.7  
LJGI gnl|LJGI|TC82648 2196 98.5 98.5 similar to UniRef100_A7Q9B1 Cluster: Chromosome chr19 scaffold_66, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr19 scaffold_66, whole genome shotgun sequence - Vitis vinifera (Grape), partial (76%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v0727740.2 length: 387 aa.
IPR001514 DNA-directed RNA polymerase, 30-40kDa subunit, conserved site
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003899 DNA-directed RNA polymerase activity    
Biological Process GO:0006351 transcription, DNA-dependent    
PatternScan PS00446 RNA_POL_D_30KD NA 106-146
IPR009025 DNA-directed RNA polymerase, RBP11-like
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003899 DNA-directed RNA polymerase activity    
Biological Process GO:0006351 transcription, DNA-dependent    
superfamily SSF55257 RBP11-like 4.5e-35 78-387
IPR011261 DNA-directed RNA polymerase, dimerisation
Molecular Function GO:0003899 DNA-directed RNA polymerase activity    
Biological Process GO:0006351 transcription, DNA-dependent    
Molecular Function GO:0046983 protein dimerization activity    
HMMPfam PF01193 RNA_pol_L 1.9e-16 93-380
IPR011262 DNA-directed RNA polymerase, insert domain
Molecular Function GO:0003899 DNA-directed RNA polymerase activity    
Biological Process GO:0006351 transcription, DNA-dependent    
Molecular Function GO:0046983 protein dimerization activity    
Gene3D G3DSA:2.170.120.12 no description 2.5e-35 118-267
HMMPfam PF01000 RNA_pol_A_bac 2.4e-25 124-270
superfamily SSF56553 Insert 2.5e-30 117-271
IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type
Molecular Function GO:0003899 DNA-directed RNA polymerase activity    
Biological Process GO:0006351 transcription, DNA-dependent    
HMMSmart SM00662 RNA 1.8e-110 92-385
no_ID  
Gene3D G3DSA:3.30.1360.10 no description 2.2e-50 268-386
HMMPanther PTHR11800 DNA-DIRECTED 5.7e-180 33-387
HMMPanther PTHR11800:SF13 DNA-DIRECTED 5.7e-180 33-387
Seg seg seg NA 3-18
Wolf-PSORT
Lj6g3v0727740.2	cyto 9, cysk 2, chlo 1, vacu 1, golg 1, cysk_nucl 1, cysk_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v0727740.2