Miyakogusa Predicted Gene

Lj6g3v0673390.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A2Q460_MEDTR 668 77.2 86.2 (tr|A2Q460) Pentatricopeptide repeat OS=Medicago truncatula GN=MTR_2g100200 PE=4 SV=1
TAIR_pep AT5G43820.1 538 59.3 76.0 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:17618948-17620588 FORWARD LENGTH=546
Medicago Medtr2g100200.2 668 77.2 86.2 | PPR containing plant-like protein | HC | chr2:43021668-43019551 | 20130731
Soybean Glyma15g12020.1 611 77.8 86.9  
LJGI gnl|LJGI|TC68622 428 99.5 99.5 similar to UniRef100_A2Q460 Cluster: Pentatricopeptide repeat; n=1; Medicago truncatula|Rep: Pentatricopeptide repeat - Medicago truncatula (Barrel medic), partial (28%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v0673390.1 length: 413 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.3 57-83
91-116
335-363
HMMPfam PF13041 PPR_2 3.2e-07 164-199
229-274
HMMPfam PF13812 PPR_3 6.7e-06 122-155
HMMTigr TIGR00756 PPR: 0.0018 124-157
159-192
194-226
229-260
334-366
ProfileScan PS51375 PPR 6.062 17-51
52-86
121-155
87-117
156-190
191-225
226-260
261-295
296-330
331-365
366-396
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 1e-05 169-392
no_ID  
HMMPanther PTHR24015 FAMILY 9.2e-92 1-394
HMMPanther PTHR24015:SF0 SUBFAMILY 9.2e-92 1-394
Wolf-PSORT
Lj6g3v0673390.1	cyto 10, chlo 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v0673390.1