Miyakogusa Predicted Gene

Lj6g3v0670010.2
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1KYR5_SOYBN 1864 77.5 83.4 (tr|I1KYR5) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT3G13300.2 1213 54.1 65.9 | Symbols: VCS | Transducin/WD40 repeat-like superfamily protein | chr3:4304085-4309949 FORWARD LENGTH=1309
Medicago Medtr3g061160.1 1864 76.9 83.3 | enhancer of mRNA-decapping-like protein | HC | chr3:24288608-24297371 | 20130731
Soybean Glyma08g44880.1 1864 77.5 83.4  
LJGI gnl|LJGI|TC58988 2149 99.8 99.8 similar to UniRef100_A7Q9H0 Cluster: Chromosome chr19 scaffold_66, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr19 scaffold_66, whole genome shotgun sequence - Vitis vinifera (Grape), partial (29%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v0670010.2 length: 1226 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 2.5e-05 130-163
249-282
HMMSmart SM00320 WD40 0.00042 123-163
245-282
ProfileScan PS50082 WD_REPEATS_2 10.141 130-172
249-282
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 5.2e-23 475-550
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 9.810 130-172
249-291
superfamily SSF50978 WD40 1.2e-22 98-387
no_ID  
HMMPanther PTHR15598 AUTOANTIGEN 2.6e-290 68-1225
HMMPanther PTHR15598:SF5 SUBFAMILY 2.6e-290 68-1225
Seg seg seg NA 8-18
35-46
372-385
554-569
685-698
794-815
841-856
1163-1179
Wolf-PSORT
Lj6g3v0670010.2	chlo 9, nucl 4
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v0670010.2