Miyakogusa Predicted Gene

Lj6g3v0657890.2
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1LN46_SOYBN 1227 88.9 91.9 (tr|I1LN46) DNA topoisomerase OS=Glycine max PE=3 SV=1
TAIR_pep AT2G32000.1 1005 71.5 82.1 | Symbols: | DNA topoisomerase, type IA, core | chr2:13615999-13621563 REVERSE LENGTH=865
Medicago Medtr3g084800.1 1194 86.0 90.5 | DNA topoisomerase I | HC | chr3:38297430-38308919 | 20130731
Soybean Glyma11g36800.1 1227 88.9 91.9  
LJGI gnl|LJGI|TC59268 1596 100.0 100.0 similar to UniRef100_A7Q9K8 Cluster: DNA topoisomerase; n=1; Vitis vinifera|Rep: DNA topoisomerase - Vitis vinifera (Grape), partial (29%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v0657890.2 length: 669 aa.
IPR000380 DNA topoisomerase, type IA
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003917 DNA topoisomerase type I activity    
Cellular Component GO:0005694 chromosome    
Biological Process GO:0006265 DNA topological change    
FPrintScan PR00417 PRTPISMRASEI 3.9e-07 12-30
130-139
207-223
305-319
HMMPanther PTHR11390 PROKARYOTIC 1.4e-267 13-655
IPR003602 DNA topoisomerase, type IA, DNA-binding
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003916 DNA topoisomerase activity    
Cellular Component GO:0005694 chromosome    
Biological Process GO:0006265 DNA topological change    
HMMSmart SM00437 Bacterial 4e-77 88-343
IPR013497 DNA topoisomerase, type IA, central
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003916 DNA topoisomerase activity    
Cellular Component GO:0005694 chromosome    
Biological Process GO:0006265 DNA topological change    
HMMPfam PF01131 Topoisom_bac 3.2e-89 12-380
IPR013824 DNA topoisomerase, type IA, central region, subdomain 1
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003916 DNA topoisomerase activity    
Cellular Component GO:0005694 chromosome    
Biological Process GO:0006265 DNA topological change    
Gene3D G3DSA:1.10.460.10 no description 2.3e-42 546-547
IPR013825 DNA topoisomerase, type IA, central region, subdomain 2
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003916 DNA topoisomerase activity    
Cellular Component GO:0005694 chromosome    
Biological Process GO:0006265 DNA topological change    
Gene3D G3DSA:2.70.20.10 no description 7.9e-24 173-288
IPR023405 DNA topoisomerase, type IA, core domain
superfamily SSF56712 Prokaryotic 1.5e-104 11-432
IPR023406 DNA topoisomerase, type IA, active site
Molecular Function GO:0003917 DNA topoisomerase type I activity    
PatternScan PS00396 TOPOISOMERASE_I_PROK NA 125-139
no_ID  
HMMPanther PTHR11390:SF17 SUBFAMILY 1.4e-267 13-655
Seg seg seg NA 630-658
Wolf-PSORT
Lj6g3v0657890.2	chlo 4, cyto 2, plas 2, extr 2, vacu 2, cyto_plas 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v0657890.2