Miyakogusa Predicted Gene
- Lj6g3v0647480.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr6
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I3SHQ4_LOTJA |
725 |
97.0 |
97.0 |
(tr|I3SHQ4) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1 |
| TAIR_pep |
AT3G20920.1 |
496 |
67.5 |
77.9 |
| Symbols: | translocation protein-related | chr3:7328763-7330698 REVERSE LENGTH=365 |
| Medicago |
Medtr3g061490.1 |
645 |
85.7 |
90.9 |
| translocation protein Sec62 | HC | chr3:24522002-24526054 | 20130731 |
| Soybean |
Glyma18g07900.1 |
613 |
82.7 |
89.0 |
|
| LJGI |
gnl|LJGI|TC58029 |
2129 |
99.4 |
99.4 |
similar to UniRef100_A7NZQ2 Cluster: Chromosome chr6 scaffold_3, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr6 scaffold_3, whole genome shotgun sequence - Vitis vinifera (Grape), partial (79%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj6g3v0647480.1 |
length: 364 aa. |
| IPR004728 |
Translocation protein Sec62 |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0008565 |
protein transporter activity |
|
|
| Biological Process |
GO:0015031 |
protein transport |
|
|
| Cellular Component |
GO:0016021 |
integral to membrane |
|
|
| HMMPanther |
PTHR12443 |
FAMILY |
2.6e-185 |
1-364 |
| HMMPfam |
PF03839 |
Sec62 |
4e-13 |
79-231 |
| no_ID |
|
| HMMPanther |
PTHR12443:SF1 |
SUBFAMILY |
2.6e-185 |
1-364 |
| Seg |
seg |
seg |
NA |
192-202 |
- Wolf-PSORT
Lj6g3v0647480.1 cyto 5, nucl 4.5, nucl_plas 3.5, plas 1.5, mito 1, E.R. 1, golg 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj6g3v0647480.1 |
|