Miyakogusa Predicted Gene

Lj6g3v0622070.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1N032_SOYBN 2182 85.7 91.2 (tr|I1N032) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT3G46960.1 1776 70.8 80.9 | Symbols: | RNA helicase, ATP-dependent, SK12/DOB1 protein | chr3:17291004-17298067 REVERSE LENGTH=1347
Medicago Medtr3g462290.1 2168 85.2 91.0 | RNA helicase, ATP-dependent, SK12/DOB1 protein | HC | chr3:24871545-24853513 | 20130731
Soybean Glyma18g07510.1 2143 83.9 89.1  
LJGI gnl|LJGI|TC69089 1542 100.0 100.0 similar to UniRef100_A7NYL9 Cluster: Chromosome chr6 scaffold_3, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr6 scaffold_3, whole genome shotgun sequence - Vitis vinifera (Grape), partial (25%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v0622070.1 length: 1257 aa.
IPR001650 Helicase, C-terminal
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0004386 helicase activity    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00271 Helicase_C 0.00014 622-696
HMMSmart SM00490 helicase 1.3e-14 610-696
ProfileScan PS51194 HELICASE_CTER 10.514 548-745
IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0008026 ATP-dependent helicase activity    
HMMPfam PF00270 DEAD 1.1e-16 274-420
IPR012961 DSH, C-terminal
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides    
HMMPfam PF08148 DSHCT 1.7e-58 1075-1254
IPR014001 Helicase, superfamily 1/2, ATP-binding domain
HMMSmart SM00487 DEAD-like 3.1e-26 267-447
ProfileScan PS51192 HELICASE_ATP_BIND_1 21.210 279-434
IPR016438 RNA helicase, ATP-dependent, SK12/DOB1
Molecular Function GO:0016817 hydrolase activity, acting on acid anhydrides    
HMMPIR PIRSF005198 Antiviral 0 1-1254
IPR025696 rRNA-processing arch domain
HMMPfam PF13234 rRNA_proc-arch 6.5e-21 753-1051
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 1.2e-41 279-716
no_ID  
Gene3D G3DSA:3.40.50.300 no description 3.1e-18 268-443
618-705
HMMPanther PTHR11752 HELICASE 0 168-1257
HMMPanther PTHR11752:SF2 HELICASE 0 168-1257
Seg seg seg NA 6-21
201-212
484-496
Wolf-PSORT
Lj6g3v0622070.1	nucl 6, mito 4, chlo 3, cyto_nucl 3, cysk_nucl 3, nucl_plas 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v0622070.1