Miyakogusa Predicted Gene

Lj6g3v0550640.2

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr6

Full length sequence(26885540 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL G7J386_MEDTR 672 76.7 85.2 (tr|G7J386) tRNA (Cytosine-5-)-methyltransferase NSUN2 OS=Medicago truncatula GN=MTR_3g086950 PE=4 SV=1

TAIR_pep AT2G22400.1 556 61.6 76.3 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr2:9504823-9508788 REVERSE LENGTH=808

Medicago Medtr3g086950.1 672 76.7 85.2 | tRNA (cytosine(34)-C(5))-methyltransferase-like protein | HC | chr3:39418089-39425597 | 20130731

Soybean Glyma11g38000.1 643 75.0 82.8

LJGI gnl|LJGI|FS327550 1235 100.0 100.0 similar to UniRef100_A7R4H7 Cluster: Chromosome undetermined scaffold_690, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_690, whole genome shotgun sequence - Vitis vinifera (Grape), partial (22%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj6g3v0550640.2 length: 439 aa.

IPR001678 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p

method AccNumber shortName E-value location

HMMPfam PF01189 Nol1_Nop2_Fmu 2.3e-27 129-337

IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site

Molecular Function GO:0003723 RNA binding

Molecular Function GO:0008168 methyltransferase activity

PatternScan PS01153 NOL1_NOP2_SUN NA 244-255

IPR023267 RNA (C5-cytosine) methyltransferase

FPrintScan PR02008 RCMTFAMILY 1e-15 155-165
245-257
295-311

IPR023270 tRNA (C5-cytosine) methyltransferase, NCL1

Molecular Function GO:0016428 tRNA (cytosine-5-)-methyltransferase activity

FPrintScan PR02011 RCMTNCL1 2.3e-09 101-122
329-348

no_ID

Gene3D G3DSA:3.40.50.150 no description 1.3e-54 137-350

HMMPanther PTHR22808 NCL1(YEAST)-RELATED 3.4e-197 17-433

HMMPanther PTHR22808:SF1 PUTATIVE 3.4e-197 17-433

superfamily SSF53335 S-adenosyl-L-methionine-dependent 2.1e-47 33-355

Wolf-PSORT

Lj6g3v0550640.2 nucl 11, cyto 2

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj6g3v0550640.2

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	G7J386_MEDTR	672	76.7	85.2	(tr\|G7J386) tRNA (Cytosine-5-)-methyltransferase NSUN2 OS=Medicago truncatula GN=MTR_3g086950 PE=4 SV=1
TAIR_pep	AT2G22400.1	556	61.6	76.3	\| Symbols: \| S-adenosyl-L-methionine-dependent methyltransferases superfamily protein \| chr2:9504823-9508788 REVERSE LENGTH=808
Medicago	Medtr3g086950.1	672	76.7	85.2	\| tRNA (cytosine(34)-C(5))-methyltransferase-like protein \| HC \| chr3:39418089-39425597 \| 20130731
Soybean	Glyma11g38000.1	643	75.0	82.8
LJGI	gnl\|LJGI\|FS327550	1235	100.0	100.0	similar to UniRef100_A7R4H7 Cluster: Chromosome undetermined scaffold_690, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome undetermined scaffold_690, whole genome shotgun sequence - Vitis vinifera (Grape), partial (22%)

IPR001678	Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p
Lj6g3v0550640.2				length: 439 aa.
method	AccNumber	shortName	E-value	location
HMMPfam	PF01189	Nol1_Nop2_Fmu	2.3e-27	129-337
IPR018314	Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site
Molecular Function	GO:0003723	RNA binding
Molecular Function	GO:0008168	methyltransferase activity
PatternScan	PS01153	NOL1_NOP2_SUN	NA	244-255
IPR023267	RNA (C5-cytosine) methyltransferase
FPrintScan	PR02008	RCMTFAMILY	1e-15	155-165 245-257 295-311
IPR023270	tRNA (C5-cytosine) methyltransferase, NCL1
Molecular Function	GO:0016428	tRNA (cytosine-5-)-methyltransferase activity
FPrintScan	PR02011	RCMTNCL1	2.3e-09	101-122 329-348
no_ID
Gene3D	G3DSA:3.40.50.150	no description	1.3e-54	137-350
HMMPanther	PTHR22808	NCL1(YEAST)-RELATED	3.4e-197	17-433
HMMPanther	PTHR22808:SF1	PUTATIVE	3.4e-197	17-433
superfamily	SSF53335	S-adenosyl-L-methionine-dependent	2.1e-47	33-355