Miyakogusa Predicted Gene

Lj6g3v0521560.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7JBA9_MEDTR 1234 73.7 80.2 (tr|G7JBA9) NF-X1-type zinc finger protein NFXL1 OS=Medicago truncatula GN=MTR_3g070780 PE=4 SV=1
TAIR_pep AT5G05660.1 982 59.2 70.8 | Symbols: ATNFXL2 | sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors | chr5:1691113-1695464 REVERSE LENGTH=880
Medicago Medtr3g070780.1 1240 74.0 80.5 | NF-X1-type zinc finger protein NFXL2 | HC | chr3:31742755-31750400 | 20130731
Soybean Glyma18g03080.1 1177 72.3 78.3  
LJGI gnl|LJGI|TC75013 811 100.0 100.0 similar to UniRef100_A7Q3H8 Cluster: Chromosome chr13 scaffold_48, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr13 scaffold_48, whole genome shotgun sequence - Vitis vinifera (Grape), partial (19%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v0521560.1 length: 868 aa.
IPR000967 Zinc finger, NF-X1-type
method AccNumber shortName E-value location
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0008270 zinc ion binding    
HMMPfam PF01422 zf-NF-X1 0.00011 236-254
HMMSmart SM00438 no description 39 184-202
210-232
236-255
289-308
343-363
396-415
423-442
480-501
509-554
591-623
633-651
696-718
IPR001841 Zinc finger, RING-type
Molecular Function GO:0005515 protein binding    
Molecular Function GO:0008270 zinc ion binding    
ProfileScan PS50089 ZF_RING_2 8.565 71-138
IPR019786 Zinc finger, PHD-type, conserved site
PatternScan PS01359 ZF_PHD_1 NA 71-137
no_ID  
HMMPanther PTHR12360 NUCLEAR 2.1e-292 7-863
HMMPanther PTHR12360:SF1 NF-X1-TYPE 2.1e-292 7-863
Seg seg seg NA 2-23
59-75
180-201
521-545
714-725
795-807
826-840
superfamily SSF57850 RING/U-box 8e-08 66-153
Wolf-PSORT
Lj6g3v0521560.1	nucl 12, mito 1, vacu 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v0521560.1