Miyakogusa Predicted Gene

Lj6g3v0466820.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1MYZ5_SOYBN 1035 86.3 91.8 (tr|I1MYZ5) Uncharacterized protein OS=Glycine max PE=3 SV=1
TAIR_pep AT5G05450.1 837 68.2 82.0 | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:1612077-1615195 FORWARD LENGTH=593
Medicago Medtr3g071620.1 1039 85.5 92.6 | DEAD-box ATP-dependent RNA helicase-like protein | HC | chr3:32167186-32161537 | 20130731
Soybean Glyma18g02760.1 1035 86.3 91.8  
LJGI gnl|LJGI|AW719523 1049 100.0 100.0 similar to UniRef100_Q0WRR0 Cluster: ATP-dependent RNA helicase-like protein; n=1; Arabidopsis thaliana|Rep: ATP-dependent RNA helicase-like protein - Arabidopsis thaliana (Mouse-ear cress), partial (31%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v0466820.1 length: 589 aa.
IPR000629 RNA helicase, ATP-dependent, DEAD-box, conserved site
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0008026 ATP-dependent helicase activity    
PatternScan PS00039 DEAD_ATP_HELICASE NA 171-179
IPR001650 Helicase, C-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0004386 helicase activity    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00271 Helicase_C 2.1e-21 304-376
HMMSmart SM00490 helicase 2.4e-25 295-376
ProfileScan PS51194 HELICASE_CTER 18.645 267-423
IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0008026 ATP-dependent helicase activity    
HMMPfam PF00270 DEAD 6.7e-42 40-214
IPR014001 Helicase, superfamily 1/2, ATP-binding domain
HMMSmart SM00487 DEAD-like 2.2e-47 35-241
ProfileScan PS51192 HELICASE_ATP_BIND_1 28.522 47-225
IPR014014 RNA helicase, DEAD-box type, Q motif
ProfileScan PS51195 Q_MOTIF 8.802 16-44
IPR025313 Domain of unknown function DUF4217
HMMPfam PF13959 DUF4217 7.4e-20 415-476
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 2.2e-61 88-397
no_ID  
Coil coil coiled-coil NA 504-525
540-568
Gene3D G3DSA:3.40.50.300 no description 3.9e-38 12-232
236-397
HMMPanther PTHR24031 FAMILY 3.6e-254 13-563
HMMPanther PTHR24031:SF2 SUBFAMILY 3.6e-254 13-563
Seg seg seg NA 517-529
Wolf-PSORT
Lj6g3v0466820.1	cyto 7, nucl 5, chlo 1, cysk 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v0466820.1