Miyakogusa Predicted Gene
- Lj6g3v0367990.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr6
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
M5W7B6_PRUPE |
78.2 |
50.0 |
57.6 |
(tr|M5W7B6) Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000169mg PE=4 SV=1 |
| TAIR_pep |
AT5G02880.1 |
71.2 |
44.4 |
60.5 |
| Symbols: UPL4 | ubiquitin-protein ligase 4 | chr5:662643-668847 FORWARD LENGTH=1502 |
| Medicago |
Medtr1g066940.1 |
65.1 |
45.1 |
54.9 |
| E3 ubiquitin-protein ligase | HC | chr1:28781562-28771167 | 20130731 |
| Soybean |
Glyma13g19980.1 |
67.8 |
45.7 |
56.4 |
|
| LJGI |
--No_Hits--
|
|
|
|
|
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj6g3v0367990.1 |
length: 103 aa. |
| IPR000569 |
HECT |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0004842 |
ubiquitin-protein ligase activity |
|
|
| Cellular Component |
GO:0005622 |
intracellular |
|
|
| Biological Process |
GO:0006464 |
cellular protein modification process |
|
|
| HMMPfam |
PF00632 |
HECT |
1.4e-08 |
29-100 |
| ProfileScan |
PS50237 |
HECT |
9.895 |
50-103 |
| superfamily |
SSF56204 |
Hect, |
4.6e-06 |
18-100 |
| no_ID |
|
| HMMPanther |
PTHR11254 |
HECT |
1.4e-18 |
25-98 |
| HMMPanther |
PTHR11254:SF73 |
HECT |
1.4e-18 |
25-98 |
- Wolf-PSORT
Lj6g3v0367990.1 cyto 8, cyto_nucl 7.5, nucl 3, mito 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj6g3v0367990.1 |
Not targeted |
-71.033 |
-18.387 |
-3.583 |
96.41% |
-49.062
|