Miyakogusa Predicted Gene

Lj6g3v0366950.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL Q40209_LOTJA 417 100.0 100.0 (tr|Q40209) RAB5A OS=Lotus japonicus GN=rab5A PE=2 SV=1
TAIR_pep AT5G45130.1 340 80.5 89.0 | Symbols: ATRAB5A, ATRABF2A, RABF2A, RAB5A, RHA1, ATRAB-F2A, RAB-F2A | RAB homolog 1 | chr5:18244495-18246060 FORWARD LENGTH=200
Medicago Medtr3g064390.1 408 97.0 99.5 | small GTPase family RAB protein | HC | chr3:28986937-28992404 | 20130731
Soybean Glyma11g33100.3 407 96.5 99.0  
LJGI gnl|LJGI|TC57193 1201 100.0 100.0 UniRef100_Q40209 Cluster: RAB5A; n=1; Lotus japonicus|Rep: RAB5A - Lotus japonicus, complete
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v0366950.1 length: 200 aa.
IPR001806 Small GTPase superfamily
method AccNumber shortName E-value location
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0007264 small GTPase mediated signal transduction    
FPrintScan PR00449 RASTRNSFRMNG 9.2e-36 11-32
34-50
52-74
114-127
149-171
HMMPfam PF00071 Ras 2.4e-59 12-171
IPR002041 Ran GTPase
Molecular Function GO:0003924 GTPase activity    
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0006184 GTP catabolic process    
Biological Process GO:0006886 intracellular protein transport    
Biological Process GO:0006913 nucleocytoplasmic transport    
Biological Process GO:0007165 signal transduction    
HMMSmart SM00176 Ran 2.6e-06 16-200
IPR003578 Small GTPase superfamily, Rho type
Molecular Function GO:0005525 GTP binding    
Cellular Component GO:0005622 intracellular    
Biological Process GO:0007264 small GTPase mediated signal transduction    
HMMSmart SM00174 Rho 3e-10 13-174
IPR003579 Small GTPase superfamily, Rab type
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0007264 small GTPase mediated signal transduction    
Biological Process GO:0015031 protein transport    
HMMSmart SM00175 Rab 7.2e-78 11-174
IPR005225 Small GTP-binding protein domain
Molecular Function GO:0005525 GTP binding    
HMMTigr TIGR00231 small_GTP: 5.2e-28 11-167
IPR020849 Small GTPase superfamily, Ras type
Molecular Function GO:0003924 GTPase activity    
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0006184 GTP catabolic process    
Biological Process GO:0007165 signal transduction    
Cellular Component GO:0016020 membrane    
HMMSmart SM00173 Ras 5.2e-29 8-174
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 1.5e-58 6-199
no_ID  
Gene3D G3DSA:3.40.50.300 no description 5.8e-65 8-199
HMMPanther PTHR24073 FAMILY 5.2e-110 9-200
HMMPanther PTHR24073:SF132SUBFAMILY NOT 5.2e-110 9-200
ProfileScan PS51419 RAB 32.497 6-200
Wolf-PSORT
Lj6g3v0366950.1	chlo 10, cyto 2, mito 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v0366950.1