Miyakogusa Predicted Gene
- Lj6g3v0365870.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr6
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1MZJ4_SOYBN |
293 |
78.9 |
86.5 |
(tr|I1MZJ4) Uncharacterized protein OS=Glycine max PE=3 SV=1 |
| TAIR_pep |
AT1G17200.1 |
211 |
62.2 |
78.8 |
| Symbols: | Uncharacterised protein family (UPF0497) | chr1:5878493-5879871 FORWARD LENGTH=204 |
| Medicago |
Medtr3g064310.1 |
280 |
73.2 |
84.2 |
| CASP POPTRDRAFT-like protein | HC | chr3:28945240-28941390 | 20130731 |
| Soybean |
Glyma18g05170.2 |
293 |
78.9 |
86.5 |
|
| LJGI |
gnl|LJGI|TC65473 |
1273 |
100.0 |
100.0 |
similar to UniRef100_A7QBZ2 Cluster: Chromosome chr1 scaffold_75, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr1 scaffold_75, whole genome shotgun sequence - Vitis vinifera (Grape), partial (75%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj6g3v0365870.1 |
length: 213 aa. |
| IPR006459 |
Uncharacterised protein family UPF0497, trans-membrane plant subgroup |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMTigr |
TIGR01569 |
A_tha_TIGR01569: |
5.9e-27 |
43-186 |
| IPR006702 |
Uncharacterised protein family UPF0497, trans-membrane plant |
| HMMPfam |
PF04535 |
DUF588 |
4.4e-38 |
35-175 |
| no_ID |
|
| HMMPanther |
PTHR11615 |
NITRATE, |
1.1e-48 |
25-188 |
| HMMPanther |
PTHR11615:SF59 |
INTEGRAL |
1.1e-48 |
25-188 |
| Seg |
seg |
seg |
NA |
193-209 |
- Wolf-PSORT
Lj6g3v0365870.1 vacu 10, plas 2, chlo 1, E.R. 1, nucl_plas 1, golg_plas 1, cysk_plas 1, mito_plas 1, cyto_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj6g3v0365870.1 |
|