Miyakogusa Predicted Gene

Lj6g3v0365860.3
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7LRE8_SOYBN 809 67.9 77.7 (tr|K7LRE8) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT5G08430.1 295 45.0 65.6 | Symbols: | SWIB/MDM2 domain;Plus-3;GYF | chr5:2716974-2720095 FORWARD LENGTH=553
Medicago Medtr3g064260.1 723 61.3 73.1 | zinc finger CCCH domain protein | LC | chr3:28905898-28897678 | 20130731
Soybean Glyma11g33020.1 484 60.7 69.3  
LJGI gnl|LJGI|AV775980 817 97.3 97.3 weakly similar to UniRef100_A7QCA6 Cluster: Chromosome undetermined scaffold_77, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_77, whole genome shotgun sequence - Vitis vinifera (Grape), partial (18%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v0365860.3 length: 973 aa.
IPR001965 Zinc finger, PHD-type
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
Molecular Function GO:0008270 zinc ion binding    
HMMSmart SM00249 PHD 3.9e-05 17-63
IPR003121 SWIB/MDM2 domain
Molecular Function GO:0005515 protein binding    
HMMPfam PF02201 SWIB 8.6e-14 239-307
superfamily SSF47592 SWIB/MDM2 2.3e-24 218-318
IPR004343 Plus-3
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006352 DNA-dependent transcription, initiation    
Biological Process GO:0016570 histone modification    
HMMPfam PF03126 Plus-3 4.9e-20 364-464
ProfileScan PS51360 PLUS3 27.877 359-488
IPR011011 Zinc finger, FYVE/PHD-type
superfamily SSF57903 FYVE/PHD 4e-07 7-70
IPR013083 Zinc finger, RING/FYVE/PHD-type
Gene3D G3DSA:3.30.40.10 no description 5.1e-06 11-70
IPR018144 Plus-3 domain, subgroup
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006352 DNA-dependent transcription, initiation    
Biological Process GO:0016570 histone modification    
HMMSmart SM00719 Short 1.6e-28 359-465
no_ID  
Coil coil coiled-coil NA 159-180
616-637
704-725
798-833
847-882
889-917
Gene3D G3DSA:1.10.245.10 no description 3.7e-22 223-312
HMMPanther PTHR15473 FAMILY 5e-68 7-403
HMMPanther PTHR15473:SF2 OS05G0420800 5e-68 7-403
Seg seg seg NA 170-196
207-222
694-723
843-862
894-909
Wolf-PSORT
Lj6g3v0365860.3	nucl 6, mito 3.5, cyto_mito 2.5, chlo 2, cyto 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v0365860.3