Miyakogusa Predicted Gene
- Lj6g3v0315170.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr6
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
G7L8Y7_MEDTR |
285 |
95.0 |
96.5 |
(tr|G7L8Y7) Trafficking protein particle complex subunit OS=Medicago truncatula GN=MTR_8g103680 PE=4 SV=1 |
| TAIR_pep |
AT5G02280.1 |
264 |
87.2 |
94.3 |
| Symbols: | SNARE-like superfamily protein | chr5:469377-470129 FORWARD LENGTH=141 |
| Medicago |
Medtr8g103680.1 |
285 |
95.0 |
96.5 |
| trafficking protein particle complex subunit-like protein | LC | chr8:43631208-43629016 | 20130731 |
| Soybean |
Glyma11g26250.3 |
284 |
93.6 |
97.2 |
|
| LJGI |
gnl|LJGI|TC67544 |
809 |
99.1 |
99.1 |
|
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj6g3v0315170.1 |
length: 141 aa. |
| IPR007233 |
Sybindin-like protein |
| method |
AccNumber |
shortName |
E-value |
location |
| Cellular Component |
GO:0005801 |
cis-Golgi network |
|
|
| Biological Process |
GO:0006888 |
ER to Golgi vesicle-mediated transport |
|
|
| HMMPanther |
PTHR23249 |
SYNBINDIN |
1.1e-56 |
3-141 |
| HMMPfam |
PF04099 |
Sybindin |
3.5e-52 |
4-133 |
| IPR011012 |
Longin-like domain |
| Biological Process |
GO:0006810 |
transport |
|
|
| superfamily |
SSF64356 |
SNARE-like |
1.6e-39 |
1-134 |
| no_ID |
|
| Gene3D |
G3DSA:3.30.450.70 |
no description |
5.2e-39 |
2-133 |
| HMMPanther |
PTHR23249:SF2 |
SYNBINDIN |
1.1e-56 |
3-141 |
- Wolf-PSORT
Lj6g3v0315170.1 cyto 4, extr 4, chlo 3, nucl 3
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj6g3v0315170.1 |
|