Miyakogusa Predicted Gene

Lj6g3v0247670.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7JAR7_MEDTR 907 92.1 95.1 (tr|G7JAR7) Serine hydroxymethyltransferase OS=Medicago truncatula GN=MTR_3g084310 PE=1 SV=1
TAIR_pep AT4G13930.1 871 87.7 93.6 | Symbols: SHM4 | serine hydroxymethyltransferase 4 | chr4:8048013-8050021 REVERSE LENGTH=471
Medicago Medtr3g084310.1 907 92.1 95.1 | serine transhydroxymethyltransferase | HC | chr3:38069696-38067331 | 20130731
Soybean Glyma05g28490.1 902 91.5 94.9  
LJGI gnl|LJGI|TC60222 1501 88.9 88.9 homologue to UniRef100_A9PL04 Cluster: Serine hydroxymethyltransferase; n=1; Populus tremuloides|Rep: Serine hydroxymethyltransferase - Populus tremuloides (Quaking aspen), complete
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v0247670.1 length: 471 aa.
IPR001085 Serine hydroxymethyltransferase
method AccNumber shortName E-value location
Molecular Function GO:0004372 glycine hydroxymethyltransferase activity    
Biological Process GO:0006544 glycine metabolic process    
Biological Process GO:0006563 L-serine metabolic process    
HAMAP MF_00051 SHMT 42.409 11-461
HMMPIR PIRSF000412 Serine/glycine 6.1e-229 1-466
HMMPanther PTHR11680 SERINE 0 1-471
HMMPfam PF00464 SHMT 7.7e-186 12-412
IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1
Molecular Function GO:0003824 catalytic activity    
Molecular Function GO:0030170 pyridoxal phosphate binding    
Gene3D G3DSA:3.40.640.10 no description 2.2e-97 41-312
IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2
Molecular Function GO:0003824 catalytic activity    
Molecular Function GO:0030170 pyridoxal phosphate binding    
Gene3D G3DSA:3.90.1150.10 no description 4.2e-60 313-463
IPR015424 Pyridoxal phosphate-dependent transferase
superfamily SSF53383 PLP-dependent 6.9e-174 5-465
IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site
Molecular Function GO:0004372 glycine hydroxymethyltransferase activity    
Biological Process GO:0006544 glycine metabolic process    
Biological Process GO:0006563 L-serine metabolic process    
Molecular Function GO:0030170 pyridoxal phosphate binding    
PatternScan PS00096 SHMT NA 236-252
no_ID  
HMMPanther PTHR11680:SF0 SUBFAMILY 0 1-471
Seg seg seg NA 258-268
Wolf-PSORT
Lj6g3v0247670.1	chlo 5, cyto 5, nucl 2, plas 1, pero 1, cysk_nucl 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v0247670.1