Miyakogusa Predicted Gene

Lj6g3v0156180.3
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7LIT2_SOYBN 650 73.7 85.2 (tr|K7LIT2) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT4G33260.1 342 42.5 63.6 | Symbols: CDC20.2 | Transducin family protein / WD-40 repeat family protein | chr4:16041233-16043180 REVERSE LENGTH=447
Medicago Medtr2g060710.1 641 72.1 85.4 | transducin/WD40 repeat protein | HC | chr2:25747612-25744900 | 20130731
Soybean Glyma10g22670.1 496 75.0 85.1  
LJGI gnl|LJGI|TC59011 692 96.5 96.5 similar to UniRef100_A7PBM7 Cluster: Chromosome chr16 scaffold_10, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr16 scaffold_10, whole genome shotgun sequence - Vitis vinifera (Grape), partial (15%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v0156180.3 length: 418 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 0.00011 176-207
219-254
264-302
359-391
HMMSmart SM00320 WD40 0.00033 131-171
174-211
215-254
260-302
305-349
352-391
ProfileScan PS50082 WD_REPEATS_2 12.881 147-180
222-254
359-392
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 8.8e-56 123-394
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 32.298 139-400
superfamily SSF50978 WD40 4.7e-60 113-391
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 241-255
289-303
378-392
no_ID  
HMMPanther PTHR19918 CELL 8.2e-152 84-418
HMMPanther PTHR19918:SF0 SUBFAMILY 8.2e-152 84-418
Wolf-PSORT
Lj6g3v0156180.3	nucl 5, cyto 5, cyto_nucl 5
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v0156180.3