Miyakogusa Predicted Gene

Lj6g3v0143880.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7N244_SOYBN 1093 88.6 94.9 (tr|K7N244) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT5G04810.1 946 76.4 90.5 | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr5:1390049-1393760 FORWARD LENGTH=952
Medicago Medtr1g048080.1 1093 86.7 94.1 | pentatricopeptide (PPR) repeat protein | HC | chr1:18204785-18193518 | 20130731
Soybean Glyma20g18010.1 1092 88.8 95.1  
LJGI --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v0143880.1 length: 606 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.00046 100-129
241-269
HMMPfam PF13041 PPR_2 2.9e-08 131-178
201-241
271-319
377-425
450-493
HMMPfam PF13812 PPR_3 1.4e-05 64-95
343-373
HMMTigr TIGR00756 PPR: 5.6e-09 64-94
100-133
134-167
170-203
204-237
240-272
274-308
309-343
344-377
380-413
414-447
450-482
ProfileScan PS51375 PPR 12.419 62-96
27-57
1-26
97-131
132-166
167-201
202-236
237-271
272-306
307-341
342-376
377-411
412-446
447-481
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 6.9e-10 309-474
no_ID  
Coil coil coiled-coil NA 72-93
HMMPanther PTHR24015 FAMILY 4.1e-131 7-529
HMMPanther PTHR24015:SF0 SUBFAMILY 4.1e-131 7-529
Seg seg seg NA 576-580
588-605
superfamily SSF48452 TPR-like 0.019 165-334
412-490
62-159
superfamily SSF81901 HCP-like 0.002 246-383
Wolf-PSORT
Lj6g3v0143880.1	cyto 8.5, cyto_nucl 5, pero 3, mito 1, E.R. 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v0143880.1