Miyakogusa Predicted Gene

Lj6g3v0086460.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL C6TEV1_SOYBN 668 72.9 77.0 (tr|C6TEV1) Putative uncharacterized protein OS=Glycine max PE=2 SV=1
TAIR_pep AT5G43960.1 296 42.8 59.7 | Symbols: | Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain | chr5:17689154-17691653 REVERSE LENGTH=450
Medicago Medtr1g045800.1 548 63.3 66.3 | Ras-GTPase-activating protein-binding protein | HC | chr1:17235956-17230849 | 20130731
Soybean Glyma10g26640.1 668 72.9 77.0  
LJGI gnl|LJGI|TC79596 2139 99.0 99.0 similar to UniRef100_A7NXI7 Cluster: Chromosome chr5 scaffold_2, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr5 scaffold_2, whole genome shotgun sequence - Vitis vinifera (Grape), partial (74%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v0086460.1 length: 470 aa.
IPR000504 RNA recognition motif domain
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMSmart SM00360 RNA 9.3e-11 315-387
ProfileScan PS50102 RRM 11.912 314-391
IPR002075 Nuclear transport factor 2
Cellular Component GO:0005622 intracellular    
Biological Process GO:0006810 transport    
HMMPfam PF02136 NTF2 2.6e-21 14-127
IPR012677 Nucleotide-binding, alpha-beta plait
Molecular Function GO:0000166 nucleotide binding    
Gene3D G3DSA:3.30.70.330 no description 6.5e-13 286-408
IPR018222 Nuclear transport factor 2, Eukaryote
ProfileScan PS50177 NTF2_DOMAIN 24.984 14-128
no_ID  
Gene3D G3DSA:3.10.450.50 no description 9.1e-28 10-131
HMMPanther PTHR10693 RAS 3e-96 8-457
HMMPanther PTHR10693:SF8 NUCLEAR 3e-96 8-457
HMMPfam PF14259 RRM_6 4.8e-10 316-382
Seg seg seg NA 82-95
277-290
322-333
398-408
415-434
superfamily SSF54427 NTF2-like 5.3e-29 10-131
superfamily SSF54928 RNA-binding 1.1e-17 301-423
Wolf-PSORT
Lj6g3v0086460.1	nucl 13
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v0086460.1