| database | Accession | Score | Iden (%) |
Posi (%) |
Definition |
|---|---|---|---|---|---|
| TrEMBL | I3SDE1_LOTJA | 258 | 100.0 | 100.0 | (tr|I3SDE1) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1 |
| TAIR_pep | AT1G60000.1 | 199 | 75.2 | 88.0 | | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:22093678-22094540 REVERSE LENGTH=258 |
| Medicago | Medtr1g045510.1 | 223 | 80.8 | 92.8 | | RNA-binding (RRM/RBD/RNP motif) family protein | HC | chr1:17072567-17075712 | 20130731 |
| Soybean | Glyma10g26920.1 | 227 | 83.2 | 92.8 | |
| LJGI | gnl|LJGI|TC62001 | 755 | 100.0 | 100.0 | similar to UniRef100_Q41124 Cluster: Chloroplast RNA binding protein precursor; n=1; Phaseolus vulgaris|Rep: Chloroplast RNA binding protein precursor - Phaseolus vulgaris (Kidney bean) (French bean), partial (75%) |
| Lj6g3v0084360.2 | length: 125 aa. | |||
| IPR000504 | RNA recognition motif domain | |||
|---|---|---|---|---|
| method | AccNumber | shortName | E-value | location |
| Molecular Function | GO:0003676 | nucleic acid binding | ||
| HMMPfam | PF00076 | RRM_1 | 2.2e-20 | 46-116 |
| HMMSmart | SM00360 | RNA | 5.8e-25 | 45-118 |
| ProfileScan | PS50102 | RRM | 19.604 | 44-122 |
| IPR012677 | Nucleotide-binding, alpha-beta plait | |||
| Molecular Function | GO:0000166 | nucleotide binding | ||
| Gene3D | G3DSA:3.30.70.330 | no description | 5.1e-30 | 4-123 |
| no_ID | ||||
| HMMPanther | PTHR24012 | FAMILY | 1.2e-49 | 1-120 |
| HMMPanther | PTHR24012:SF151SUBFAMILY | NOT | 1.2e-49 | 1-120 |
| superfamily | SSF54928 | RNA-binding | 0.0011 | 37-124 1-42 |
Lj6g3v0084360.2 chlo 4, nucl 4, extr 3, cyto 1, plas 1, pero 1, cyto_pero 1, cyto_plas 1
| entry_id | prediction | score | sppta | spptna | fp | profile |
|---|---|---|---|---|---|---|
| Lj6g3v0084360.2 | Not targeted | -26.282 | -1.043 | -0.055 | 23.07% | -25.185 |