Miyakogusa Predicted Gene

Lj6g3v0084360.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I3SDE1_LOTJA 434 85.5 85.5 (tr|I3SDE1) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
TAIR_pep AT1G60000.1 275 74.0 89.0 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:22093678-22094540 REVERSE LENGTH=258
Medicago Medtr1g045510.1 342 64.8 72.9 | RNA-binding (RRM/RBD/RNP motif) family protein | HC | chr1:17072567-17075712 | 20130731
Soybean Glyma10g26920.1 335 65.7 73.1  
LJGI gnl|LJGI|TC62001 1635 100.0 100.0 similar to UniRef100_Q41124 Cluster: Chloroplast RNA binding protein precursor; n=1; Phaseolus vulgaris|Rep: Chloroplast RNA binding protein precursor - Phaseolus vulgaris (Kidney bean) (French bean), partial (75%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v0084360.1 length: 273 aa.
IPR000504 RNA recognition motif domain
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMPfam PF00076 RRM_1 1.3e-19 103-173
194-264
HMMSmart SM00360 RNA 5.8e-25 102-175
193-266
ProfileScan PS50102 RRM 19.604 101-179
192-270
IPR012677 Nucleotide-binding, alpha-beta plait
Molecular Function GO:0000166 nucleotide binding    
Gene3D G3DSA:3.30.70.330 no description 2.5e-27 92-181
182-272
no_ID  
HMMPanther PTHR24012 FAMILY 6.9e-81 8-268
HMMPanther PTHR24012:SF151SUBFAMILY NOT 6.9e-81 8-268
Seg seg seg NA 2-18
64-100
superfamily SSF54928 RNA-binding 1.4e-43 100-272
Wolf-PSORT
Lj6g3v0084360.1	chlo 14
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v0084360.1 Not targeted -26.282 -1.043 -0.055 23.07% -25.185