| database | Accession | Score | Iden (%) |
Posi (%) |
Definition |
|---|---|---|---|---|---|
| TrEMBL | I1NEN5_SOYBN | 1009 | 91.3 | 95.8 | (tr|I1NEN5) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep | AT2G33340.2 | 822 | 75.3 | 86.3 | | Symbols: MAC3B | MOS4-associated complex 3B | chr2:14126584-14131000 REVERSE LENGTH=525 |
| Medicago | Medtr1g044720.1 | 948 | 86.7 | 94.6 | | Pre-mRNA-processing factor | HC | chr1:16888450-16897958 | 20130731 |
| Soybean | Glyma20g21330.1 | 1009 | 91.3 | 95.8 | |
| LJGI | gnl|LJGI|TC57467 | 1507 | 100.0 | 100.0 |
| Lj6g3v0082160.1 | length: 524 aa. | |||
| IPR001680 | WD40 repeat | |||
|---|---|---|---|---|
| method | AccNumber | shortName | E-value | location |
| Molecular Function | GO:0005515 | protein binding | ||
| HMMPfam | PF00400 | WD40 | 0.00017 | 255-291 300-336 354-382 389-423 485-512 |
| HMMSmart | SM00320 | WD40 | 0.0067 | 208-250 253-292 298-337 340-382 385-423 426-465 472-513 |
| ProfileScan | PS50082 | WD_REPEATS_2 | 9.907 | 260-292 305-346 350-391 392-432 |
| IPR003613 | U box domain | |||
| Cellular Component | GO:0000151 | ubiquitin ligase complex | ||
| Molecular Function | GO:0004842 | ubiquitin-protein ligase activity | ||
| Biological Process | GO:0016567 | protein ubiquitination | ||
| HMMSmart | SM00504 | Modified | 1.1e-22 | 1-66 |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type | |||
| Gene3D | G3DSA:3.30.40.10 | no description | 4.5e-23 | 1-57 |
| IPR013915 | Pre-mRNA-splicing factor 19 | |||
| HMMPfam | PF08606 | Prp19 | 2e-31 | 65-132 |
| IPR015943 | WD40/YVTN repeat-like-containing domain | |||
| Molecular Function | GO:0005515 | protein binding | ||
| Gene3D | G3DSA:2.130.10.10 | no description | 1.3e-66 | 220-512 |
| IPR017986 | WD40-repeat-containing domain | |||
| Molecular Function | GO:0005515 | protein binding | ||
| ProfileScan | PS50294 | WD_REPEATS_REGION | 36.253 | 218-522 |
| superfamily | SSF50978 | WD40 | 5.3e-63 | 222-513 |
| IPR019775 | WD40 repeat, conserved site | |||
| PatternScan | PS00678 | WD_REPEATS_1 | NA | 369-383 |
| no_ID | ||||
| Coil | coil | coiled-coil | NA | 115-136 |
| HMMPanther | PTHR13889 | PRE-MRNA | 0 | 1-519 |
| HMMPanther | PTHR13889:SF9 | PRE-MRNA | 0 | 1-519 |
| superfamily | SSF57850 | RING/U-box | 1.9e-15 | 1-55 |
Lj6g3v0082160.1 nucl 5, cyto 4, cysk_nucl 4
| entry_id | prediction | score | sppta | spptna | fp | profile |
|---|---|---|---|---|---|---|
| Lj6g3v0082160.1 |