Miyakogusa Predicted Gene

Lj6g3v0072140.2

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr6

Full length sequence(26885540 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL K7LKS3_SOYBN 888 77.5 84.3 (tr|K7LKS3) Uncharacterized protein OS=Glycine max PE=4 SV=1

TAIR_pep AT1G34260.1 374 49.4 65.1 | Symbols: FAB1D | FORMS APLOID AND BINUCLEATE CELLS 1A | chr1:12485967-12491799 FORWARD LENGTH=1456

Medicago Medtr1g097110.1 858 74.1 81.9 | phosphatidylinositol-4-phosphate 5-kinase family protein | HC | chr1:43796247-43786586 | 20130731

Soybean Glyma20g31340.1 764 84.3 89.9

LJGI gnl|LJGI|DC592953 1138 99.8 99.8 similar to UniRef100_A7QLS8 Cluster: Chromosome chr18 scaffold_121, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr18 scaffold_121, whole genome shotgun sequence - Vitis vinifera (Grape), partial (11%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj6g3v0072140.2 length: 629 aa.

IPR002423 Chaperonin Cpn60/TCP-1

method AccNumber shortName E-value location

Molecular Function GO:0005524 ATP binding

Biological Process GO:0044267 cellular protein metabolic process

HMMPanther PTHR11353 CHAPERONIN 2.7e-88 227-543

HMMPfam PF00118 Cpn60_TCP1 3.8e-19 211-455

IPR027409 GroEL-like apical domain

Gene3D G3DSA:3.50.7.10 no description 2.7e-35 270-439

superfamily SSF52029 GroEL 1.6e-32 271-439

no_ID

HMMPanther PTHR11353:SF14 FYVE 2.7e-88 227-543

Seg seg seg NA 213-227
571-587

Wolf-PSORT

Lj6g3v0072140.2 nucl 6, chlo 3, nucl_plas 3, mito 2, cysk 2

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj6g3v0072140.2

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	K7LKS3_SOYBN	888	77.5	84.3	(tr\|K7LKS3) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep	AT1G34260.1	374	49.4	65.1	\| Symbols: FAB1D \| FORMS APLOID AND BINUCLEATE CELLS 1A \| chr1:12485967-12491799 FORWARD LENGTH=1456
Medicago	Medtr1g097110.1	858	74.1	81.9	\| phosphatidylinositol-4-phosphate 5-kinase family protein \| HC \| chr1:43796247-43786586 \| 20130731
Soybean	Glyma20g31340.1	764	84.3	89.9
LJGI	gnl\|LJGI\|DC592953	1138	99.8	99.8	similar to UniRef100_A7QLS8 Cluster: Chromosome chr18 scaffold_121, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr18 scaffold_121, whole genome shotgun sequence - Vitis vinifera (Grape), partial (11%)

IPR002423	Chaperonin Cpn60/TCP-1
Lj6g3v0072140.2				length: 629 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0005524	ATP binding
Biological Process	GO:0044267	cellular protein metabolic process
HMMPanther	PTHR11353	CHAPERONIN	2.7e-88	227-543
HMMPfam	PF00118	Cpn60_TCP1	3.8e-19	211-455
IPR027409	GroEL-like apical domain
Gene3D	G3DSA:3.50.7.10	no description	2.7e-35	270-439
superfamily	SSF52029	GroEL	1.6e-32	271-439
no_ID
HMMPanther	PTHR11353:SF14	FYVE	2.7e-88	227-543
Seg	seg	seg	NA	213-227 571-587