Miyakogusa Predicted Gene

Lj6g3v0061030.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1LCF4_SOYBN 1131 80.7 89.0 (tr|I1LCF4) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT1G25360.1 820 59.2 75.2 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:8894428-8896800 FORWARD LENGTH=790
Medicago Medtr1g073300.1 1117 78.1 88.3 | pentatricopeptide (PPR) repeat protein | HC | chr1:32525227-32527614 | 20130731
Soybean Glyma10g33420.1 1132 80.7 89.0  
LJGI --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v0061030.1 length: 662 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.013 90-114
197-222
225-254
432-453
495-524
HMMPfam PF13041 PPR_2 3e-11 119-163
254-300
355-402
HMMTigr TIGR00756 PPR: 7.5e-08 90-114
120-154
225-254
257-288
357-390
ProfileScan PS51375 PPR 8.791 118-152
87-117
153-187
254-288
223-253
192-222
289-323
355-389
390-425
426-460
492-526
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 3e-08 455-511
no_ID  
HMMPanther PTHR24015 FAMILY 1.9e-284 1-662
HMMPanther PTHR24015:SF169PENTATRICOPEPTIDE (PPR) 1.9e-284 1-662
HMMPfam PF14432 DYW_deaminase 5.2e-20 529-652
Seg seg seg NA 635-652
Wolf-PSORT
Lj6g3v0061030.1	chlo 7, cyto 2, extr 2, nucl 1, vacu 1, E.R. 1, E.R._vacu 1, cyto_pero 1, cyto_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v0061030.1