Miyakogusa Predicted Gene

Lj6g3v0001260.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL M5XH21_PRUPE 671 57.4 74.8 (tr|M5XH21) Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001868mg PE=4 SV=1
TAIR_pep AT4G21300.1 375 34.3 56.8 | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:11336479-11339052 FORWARD LENGTH=857
Medicago Medtr1g041310.1 903 78.1 87.1 | pentatricopeptide (PPR) repeat protein | HC | chr1:15372357-15367000 | 20130731
Soybean Glyma15g09120.1 369 35.6 56.2  
LJGI --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v0001260.1 length: 566 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.0012 81-108
253-279
354-379
453-479
HMMPfam PF13041 PPR_2 7e-10 177-223
279-326
383-427
HMMTigr TIGR00756 PPR: 0.0013 81-113
180-214
281-314
354-379
383-416
418-445
454-479
ProfileScan PS51375 PPR 6.401 9-43
78-112
45-75
113-147
178-212
148-177
279-313
248-278
380-414
349-379
415-445
451-485
517-551
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 4.4e-12 458-536
no_ID  
HMMPanther PTHR24015 FAMILY 6.1e-181 4-566
HMMPanther PTHR24015:SF169PENTATRICOPEPTIDE (PPR) 6.1e-181 4-566
Wolf-PSORT
Lj6g3v0001260.1	chlo 8, cyto 5
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v0001260.1