Miyakogusa Predicted Gene

Lj5g3v2300300.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr5
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL C6TA41_SOYBN 436 72.6 79.9 (tr|C6TA41) Uncharacterized protein OS=Glycine max PE=2 SV=1
TAIR_pep AT5G06770.1 171 45.9 58.5 | Symbols: | KH domain-containing protein / zinc finger (CCCH type) family protein | chr5:2090937-2092787 REVERSE LENGTH=240
Medicago Medtr1g116940.1 366 68.9 76.7 | zinc finger C-x8-C-x5-C-x3-H type family protein | HC | chr1:52813237-52812415 | 20130731
Soybean Glyma20g39160.1 436 72.6 79.9  
LJGI gnl|LJGI|TC73814 1782 99.9 99.9 similar to UniRef100_A7P000 Cluster: Chromosome chr6 scaffold_3, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr6 scaffold_3, whole genome shotgun sequence - Vitis vinifera (Grape), partial (88%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj5g3v2300300.1 length: 299 aa.
IPR000571 Zinc finger, CCCH-type
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0008270 zinc ion binding    
Gene3D G3DSA:4.10.1000.10 no description 1.1e-14 35-58
98-131
262-297
HMMPfam PF00642 zf-CCCH 1.9e-09 102-127
267-290
HMMSmart SM00356 zinc 8.5e-07 33-60
102-127
265-291
ProfileScan PS50103 ZF_C3H1 16.493 33-61
101-128
265-292
IPR004087 K Homology domain
Molecular Function GO:0003723 RNA binding    
HMMSmart SM00322 K 5.3e-10 172-242
IPR004088 K Homology domain, type 1
Molecular Function GO:0003723 RNA binding    
HMMPfam PF00013 KH_1 2.8e-12 175-237
ProfileScan PS50084 KH_TYPE_1 13.816 173-237
no_ID  
Gene3D G3DSA:3.30.1370.10 no description 3.7e-14 171-242
HMMPanther PTHR10288 KH 3.1e-130 16-297
HMMPanther PTHR10288:SF5 ZINC 3.1e-130 16-297
Seg seg seg NA 86-101
151-176
superfamily SSF54791 Eukaryotic 2.7e-15 160-243
superfamily SSF90229 CCCH 1.1e-05 98-133
263-297
29-62
Wolf-PSORT
Lj5g3v2300300.1	nucl 11, chlo 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj5g3v2300300.1 Not targeted -10.978 0 -0.469 4.29% -10.509