Miyakogusa Predicted Gene

Lj5g3v2290060.2
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr5
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1LFF6_SOYBN 710 85.5 89.1 (tr|I1LFF6) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT3G55070.1 608 74.9 85.6 | Symbols: | LisH/CRA/RING-U-box domains-containing protein | chr3:20408377-20410887 FORWARD LENGTH=418
Medicago Medtr1g116055.1 675 86.8 91.4 | macrophage erythroblast attacher-like protein | HC | chr1:52446990-52441637 | 20130731
Soybean Glyma10g43910.1 710 85.5 89.1  
LJGI gnl|LJGI|TC64328 2460 99.9 99.9 similar to UniRef100_A7Q412 Cluster: Chromosome chr13 scaffold_48, whole genome shotgun sequence; n=2; Vitis vinifera|Rep: Chromosome chr13 scaffold_48, whole genome shotgun sequence - Vitis vinifera (Grape), partial (96%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj5g3v2290060.2 length: 414 aa.
IPR006594 LisH dimerisation motif
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
ProfileScan PS50896 LISH 8.300 140-172
IPR006595 CTLH, C-terminal LisH motif
HMMSmart SM00668 C-terminal 1.6e-14 178-235
ProfileScan PS50897 CTLH 13.725 178-235
IPR013144 CRA domain
HMMSmart SM00757 CT11-RanBPM 4.1e-25 231-325
IPR024964 CTLH/CRA C-terminal to LisH motif domain
HMMPfam PF10607 CLTH 3e-41 179-320
IPR027370 RING-type zinc-finger, LisH dimerisation motif
HMMPfam PF13445 zf-RING_LisH 4e-18 344-398
no_ID  
HMMPanther PTHR12170 MACROPHAGE 2.3e-170 30-414
HMMPanther PTHR12170:SF2 ERYTHROBLAST 2.3e-170 30-414
Seg seg seg NA 7-29
78-89
superfamily SSF57850 RING/U-box 1.7e-07 354-413
Wolf-PSORT
Lj5g3v2290060.2	cyto 7, nucl 5, plas 1, E.R._vacu 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj5g3v2290060.2