Miyakogusa Predicted Gene

Lj5g3v2265250.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr5
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
TrEMBL I1LFC9_SOYBN 344 52.1 59.2 (tr|I1LFC9) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT3G55340.1 245 36.4 46.5 | Symbols: PHIP1 | phragmoplastin interacting protein 1 | chr3:20515672-20517832 FORWARD LENGTH=597
Medicago Medtr1g115375.1 303 53.1 63.3 | RNA recognition motif, a.k.a. RRM, RBD protein | HC | chr1:52075123-52071412 | 20130731
Soybean Glyma10g43660.1 344 52.1 59.2  
LJGI gnl|LJGI|TC75695 983 99.8 99.8 homologue to UniRef100_Q9SCY3 Cluster: Probable FKBP-type peptidyl-prolyl cis-trans isomerase 4, chloroplast precursor; n=1; Arabidopsis thaliana|Rep: Probable FKBP-type peptidyl-prolyl cis-trans isomerase 4, chloroplast precursor - Arabidopsis thaliana (Mouse-ear cress), partial (7%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj5g3v2265250.1 length: 573 aa.
IPR000504 RNA recognition motif domain
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMPfam PF00076 RRM_1 8.5e-14 177-243
HMMSmart SM00360 RNA 1e-14 176-248
270-341
ProfileScan PS50102 RRM 13.396 175-252
269-345
IPR001878 Zinc finger, CCHC-type
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0008270 zinc ion binding    
Gene3D G3DSA:4.10.60.10 no description 3.5e-14 425-438
499-508
546-569
HMMPfam PF00098 zf-CCHC 0.0012 429-446
490-507
550-567
HMMSmart SM00343 zinc 0.0056 369-385
430-446
491-507
551-567
ProfileScan PS50158 ZF_CCHC 9.867 368-385
429-446
490-507
550-567
superfamily SSF57756 Retrovirus 3.7e-07 478-571
406-452
IPR012677 Nucleotide-binding, alpha-beta plait
Molecular Function GO:0000166 nucleotide binding    
Gene3D G3DSA:3.30.70.330 no description 9e-16 170-255
256-342
no_ID  
Coil coil coiled-coil NA 110-139
HMMPanther PTHR24011 FAMILY 6.4e-88 77-380
HMMPanther PTHR24011:SF13 SUBFAMILY 6.4e-88 77-380
HMMPfam PF13917 zf-CCHC_3 0.25 366-385
HMMPfam PF14259 RRM_6 3e-08 271-339
Seg seg seg NA 85-96
113-141
227-239
531-549
superfamily SSF54928 RNA-binding 2.5e-18 134-259
262-377
Wolf-PSORT
Lj5g3v2265250.1	nucl 11, mito 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj5g3v2265250.1