| database | Accession | Score | Iden (%) |
Posi (%) |
Definition |
|---|---|---|---|---|---|
| TrEMBL | I1LFC9_SOYBN | 344 | 52.1 | 59.2 | (tr|I1LFC9) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep | AT3G55340.1 | 245 | 36.4 | 46.5 | | Symbols: PHIP1 | phragmoplastin interacting protein 1 | chr3:20515672-20517832 FORWARD LENGTH=597 |
| Medicago | Medtr1g115375.1 | 303 | 53.1 | 63.3 | | RNA recognition motif, a.k.a. RRM, RBD protein | HC | chr1:52075123-52071412 | 20130731 |
| Soybean | Glyma10g43660.1 | 344 | 52.1 | 59.2 | |
| LJGI | gnl|LJGI|TC75695 | 983 | 99.8 | 99.8 | homologue to UniRef100_Q9SCY3 Cluster: Probable FKBP-type peptidyl-prolyl cis-trans isomerase 4, chloroplast precursor; n=1; Arabidopsis thaliana|Rep: Probable FKBP-type peptidyl-prolyl cis-trans isomerase 4, chloroplast precursor - Arabidopsis thaliana (Mouse-ear cress), partial (7%) |
| Lj5g3v2265250.1 | length: 573 aa. | |||
| IPR000504 | RNA recognition motif domain | |||
|---|---|---|---|---|
| method | AccNumber | shortName | E-value | location |
| Molecular Function | GO:0003676 | nucleic acid binding | ||
| HMMPfam | PF00076 | RRM_1 | 8.5e-14 | 177-243 |
| HMMSmart | SM00360 | RNA | 1e-14 | 176-248 270-341 |
| ProfileScan | PS50102 | RRM | 13.396 | 175-252 269-345 |
| IPR001878 | Zinc finger, CCHC-type | |||
| Molecular Function | GO:0003676 | nucleic acid binding | ||
| Molecular Function | GO:0008270 | zinc ion binding | ||
| Gene3D | G3DSA:4.10.60.10 | no description | 3.5e-14 | 425-438 499-508 546-569 |
| HMMPfam | PF00098 | zf-CCHC | 0.0012 | 429-446 490-507 550-567 |
| HMMSmart | SM00343 | zinc | 0.0056 | 369-385 430-446 491-507 551-567 |
| ProfileScan | PS50158 | ZF_CCHC | 9.867 | 368-385 429-446 490-507 550-567 |
| superfamily | SSF57756 | Retrovirus | 3.7e-07 | 478-571 406-452 |
| IPR012677 | Nucleotide-binding, alpha-beta plait | |||
| Molecular Function | GO:0000166 | nucleotide binding | ||
| Gene3D | G3DSA:3.30.70.330 | no description | 9e-16 | 170-255 256-342 |
| no_ID | ||||
| Coil | coil | coiled-coil | NA | 110-139 |
| HMMPanther | PTHR24011 | FAMILY | 6.4e-88 | 77-380 |
| HMMPanther | PTHR24011:SF13 | SUBFAMILY | 6.4e-88 | 77-380 |
| HMMPfam | PF13917 | zf-CCHC_3 | 0.25 | 366-385 |
| HMMPfam | PF14259 | RRM_6 | 3e-08 | 271-339 |
| Seg | seg | seg | NA | 85-96 113-141 227-239 531-549 |
| superfamily | SSF54928 | RNA-binding | 2.5e-18 | 134-259 262-377 |
Lj5g3v2265250.1 nucl 11, mito 2
| entry_id | prediction | score | sppta | spptna | fp | profile |
|---|---|---|---|---|---|---|
| Lj5g3v2265250.1 |