Miyakogusa Predicted Gene

Lj5g3v2258330.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr5
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7LLZ5_SOYBN 1288 69.4 78.8 (tr|K7LLZ5) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT1G78610.1 868 52.0 64.3 | Symbols: MSL6 | mechanosensitive channel of small conductance-like 6 | chr1:29569226-29572126 REVERSE LENGTH=856
Medicago Medtr1g113850.1 1286 70.2 78.3 | mechanosensitive ion channel family protein | HC | chr1:51368627-51363934 | 20130731
Soybean Glyma20g23910.1 1222 68.2 77.3  
LJGI gnl|LJGI|TC58146 1550 100.0 100.0 similar to UniRef100_A7P8H8 Cluster: Chromosome chr3 scaffold_8, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr3 scaffold_8, whole genome shotgun sequence - Vitis vinifera (Grape), partial (8%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj5g3v2258330.1 length: 930 aa.
IPR006685 Mechanosensitive ion channel MscS
method AccNumber shortName E-value location
Cellular Component GO:0016020 membrane    
Biological Process GO:0055085 transmembrane transport    
HMMPfam PF00924 MS_channel 2.8e-22 697-901
IPR010920 Like-Sm (LSM) domain
superfamily SSF50182 Sm-like 2.7e-13 739-805
IPR016688 Mechanosensitive ion channel MscS-like, plants/fungi
HMMPIR PIRSF017209 Predicted 0 2-929
no_ID  
Coil coil coiled-coil NA 482-506
Gene3D G3DSA:2.30.30.60 no description 4.8e-12 755-804
HMMPanther PTHR31618 FAMILY 0 3-930
HMMPanther PTHR31618:SF0 SUBFAMILY 0 3-930
Seg seg seg NA 200-217
273-286
287-302
484-498
698-713
721-736
Wolf-PSORT
Lj5g3v2258330.1	plas 5, nucl 3, cyto 3, cyto_nucl 3, golg_plas 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj5g3v2258330.1