Miyakogusa Predicted Gene
- Lj5g3v2242490.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr5
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
K7LLX4_SOYBN |
75.5 |
41.4 |
59.6 |
(tr|K7LLX4) Uncharacterized protein (Fragment) OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT3G18990.1 |
59.7 |
40.8 |
57.9 |
| Symbols: VRN1, REM39 | AP2/B3-like transcriptional factor family protein | chr3:6549077-6551568 REVERSE LENGTH=341 |
| Medicago |
Medtr1g108780.1 |
62.8 |
29.0 |
42.5 |
| transcriptional factor B3 family protein | HC | chr1:49164002-49166141 | 20130731 |
| Soybean |
Glyma20g24270.1 |
52.8 |
35.5 |
55.3 |
|
| LJGI |
--No_Hits--
|
|
|
|
|
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj5g3v2242490.1 |
length: 162 aa. |
| IPR003340 |
B3 DNA binding domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003677 |
DNA binding |
|
|
| Biological Process |
GO:0006355 |
regulation of transcription, DNA-dependent |
|
|
| HMMPfam |
PF02362 |
B3 |
1e-15 |
82-161 |
| HMMSmart |
SM01019 |
B3 |
1.3e-09 |
76-162 |
| ProfileScan |
PS50863 |
B3 |
12.153 |
70-162 |
| IPR015300 |
DNA-binding pseudobarrel domain |
| Gene3D |
G3DSA:2.40.330.10 |
no description |
3e-16 |
72-160 |
| superfamily |
SSF101936 |
DNA-binding |
2.1e-14 |
70-161 |
- Wolf-PSORT
Lj5g3v2242490.1 cyto 10, nucl 2, chlo 1, mito 1, chlo_mito 1, cysk_nucl 1, nucl_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj5g3v2242490.1 |
|