Miyakogusa Predicted Gene

Lj5g3v2241240.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr5
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7MDW5_SOYBN 1480 82.7 89.0 (tr|K7MDW5) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT1G20960.2 1317 72.8 84.8 | Symbols: emb1507 | U5 small nuclear ribonucleoprotein helicase, putative | chr1:7302591-7309914 REVERSE LENGTH=2171
Medicago Medtr2g064740.1 1451 80.5 88.2 | U5 small nuclear ribonucleoprotein 200 kDa helicase | HC | chr2:29260637-29270804 | 20130731
Soybean Glyma15g40460.1 1480 82.7 89.0  
LJGI gnl|LJGI|TC71601 793 89.4 89.4 homologue to UniRef100_A7QM75 Cluster: Chromosome chr5 scaffold_124, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr5 scaffold_124, whole genome shotgun sequence - Vitis vinifera (Grape), partial (15%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj5g3v2241240.1 length: 953 aa.
IPR001650 Helicase, C-terminal
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0004386 helicase activity    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00271 Helicase_C 1.1e-08 448-525
HMMSmart SM00490 helicase 3e-17 438-526
ProfileScan PS51194 HELICASE_CTER 11.953 365-567
IPR004179 Sec63 domain
HMMPfam PF02889 Sec63 5.5e-98 648-950
HMMSmart SM00611 Domain 3.3e-131 644-951
HMMSmart SM00973 Sec63 1.6e-110 647-950
IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0008026 ATP-dependent helicase activity    
HMMPfam PF00270 DEAD 1.1e-26 147-319
IPR014001 Helicase, superfamily 1/2, ATP-binding domain
HMMSmart SM00487 DEAD-like 5.5e-20 141-355
ProfileScan PS51192 HELICASE_ATP_BIND_1 18.959 154-339
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 6.3e-05 152-545
874-951
no_ID  
Gene3D G3DSA:1.10.3380.10 no description 9.3e-33 678-787
Gene3D G3DSA:3.40.50.300 no description 1e-23 136-319
373-565
HMMPanther PTHR11752 HELICASE 0 74-951
HMMPanther PTHR11752:SF7 U520 0 74-951
Seg seg seg NA 56-72
276-287
Wolf-PSORT
Lj5g3v2241240.1	mito 9, chlo_mito 7.33333, cyto_mito 5.33333, chlo 4.5
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj5g3v2241240.1