Miyakogusa Predicted Gene

Lj5g3v2240840.2
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr5
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1NH84_SOYBN 601 79.2 87.9 (tr|I1NH84) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT1G71840.1 506 64.6 80.3 | Symbols: | transducin family protein / WD-40 repeat family protein | chr1:27022424-27024380 FORWARD LENGTH=407
Medicago Medtr1g097140.1 526 70.0 80.3 | vegetative incompatibility HET-E-like protein | HC | chr1:43824050-43816450 | 20130731
Soybean Glyma20g31330.3 601 79.2 87.9  
LJGI gnl|LJGI|TC60154 2083 97.4 97.4 similar to UniRef100_A7QLT1 Cluster: Chromosome chr18 scaffold_121, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr18 scaffold_121, whole genome shotgun sequence - Vitis vinifera (Grape), partial (86%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj5g3v2240840.2 length: 391 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 6.5e-10 55-87
101-134
138-175
185-217
233-260
267-304
313-344
348-385
HMMSmart SM00320 WD40 4.2e-10 52-92
95-134
136-175
178-217
220-262
265-304
306-344
347-386
ProfileScan PS50082 WD_REPEATS_2 13.148 102-134
143-184
185-226
272-306
313-353
354-391
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 2.5e-87 56-387
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 59.901 59-391
superfamily SSF50978 WD40 3.1e-82 51-390
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 162-176
291-305
331-345
IPR020472 G-protein beta WD-40 repeat
FPrintScan PR00320 GPROTEINBRPT 1.3e-06 121-135
204-218
331-345
no_ID  
HMMPanther PTHR19857 FAMILY 3.8e-186 11-388
HMMPanther PTHR19857:SF16 TRANSDUCIN 3.8e-186 11-388
Seg seg seg NA 11-23
Wolf-PSORT
Lj5g3v2240840.2	cysk 7, cyto 4, nucl 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj5g3v2240840.2