Miyakogusa Predicted Gene

Lj5g3v2240840.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr5
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1NH84_SOYBN 371 81.0 89.6 (tr|I1NH84) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT1G71840.1 301 62.8 80.7 | Symbols: | transducin family protein / WD-40 repeat family protein | chr1:27022424-27024380 FORWARD LENGTH=407
Medicago Medtr1g097140.1 342 78.3 88.0 | vegetative incompatibility HET-E-like protein | HC | chr1:43824050-43816450 | 20130731
Soybean Glyma20g31330.3 371 81.0 89.6  
LJGI gnl|LJGI|TC60154 1209 98.2 98.2 similar to UniRef100_A7QLT1 Cluster: Chromosome chr18 scaffold_121, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr18 scaffold_121, whole genome shotgun sequence - Vitis vinifera (Grape), partial (86%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj5g3v2240840.1 length: 219 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 2.8e-10 13-45
61-88
95-132
141-172
176-213
HMMSmart SM00320 WD40 4.2e-10 6-45
48-90
93-132
134-172
175-214
ProfileScan PS50082 WD_REPEATS_2 13.148 13-54
100-134
141-181
182-219
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 1.5e-57 2-215
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 43.318 1-219
superfamily SSF50978 WD40 1.8e-54 9-218
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 119-133
159-173
IPR020472 G-protein beta WD-40 repeat
FPrintScan PR00320 GPROTEINBRPT 6.5e-06 32-46
119-133
159-173
no_ID  
HMMPanther PTHR19857 FAMILY 8.3e-100 1-216
HMMPanther PTHR19857:SF16 TRANSDUCIN 8.3e-100 1-216
Wolf-PSORT
Lj5g3v2240840.1	cysk 10, cyto 2, chlo 1, extr 1, cyto_nucl 1, cyto_pero 1, cyto_E.R. 1, cyto_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj5g3v2240840.1