Miyakogusa Predicted Gene

Lj5g3v2220290.2
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr5
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1NFF5_SOYBN 874 68.2 76.4 (tr|I1NFF5) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT5G04290.1 582 46.6 62.6 | Symbols: KTF1, SPT5L | kow domain-containing transcription factor 1 | chr5:1196069-1202653 FORWARD LENGTH=1493
Medicago Medtr1g111560.1 790 63.9 73.6 | transcription elongation factor Spt5-like protein, putative | HC | chr1:50409508-50417420 | 20130731
Soybean Glyma20g24690.1 861 67.4 75.6  
LJGI gnl|LJGI|BW614906 761 99.7 99.7 weakly similar to UniRef100_Q3E9M3 Cluster: Uncharacterized protein At5g04290.1; n=1; Arabidopsis thaliana|Rep: Uncharacterized, partial (2%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj5g3v2220290.2 length: 788 aa.
IPR005100 Transcription elongation factor Spt5, NGN domain
method AccNumber shortName E-value location
HMMPfam PF03439 Spt5-NGN 1.7e-19 144-227
IPR005824 KOW
HMMSmart SM00739 KOW 21 235-262
470-497
580-607
IPR008991 Translation protein SH3-like domain
superfamily SSF50104 Translation 0.013 571-632
461-522
IPR017071 Transcription elongation factor Spt5
Biological Process GO:0006357 regulation of transcription from RNA polymerase II promoter    
Biological Process GO:0032784 regulation of DNA-dependent transcription, elongation    
HMMPanther PTHR11125:SF7 SUBFAMILY 5.1e-100 22-635
no_ID  
HMMPanther PTHR11125 SUPPRESSOR 5.1e-100 22-635
Seg seg seg NA 22-36
48-67
390-402
634-647
658-748
Wolf-PSORT
Lj5g3v2220290.2	nucl 12, plas 1, cysk 1, cysk_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj5g3v2220290.2