Miyakogusa Predicted Gene

Lj5g3v2219240.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr5
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1LEZ0_SOYBN 224 82.4 83.1 (tr|I1LEZ0) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT1G60650.2 180 66.7 76.0 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain | chr1:22340089-22342148 FORWARD LENGTH=292
Medicago Medtr4g070140.1 92.0 48.8 73.8 | RNA-binding (RRM/RBD/RNP motif) family protein | LC | chr4:26401562-26402849 | 20130731
Soybean Glyma10g42320.1 224 82.4 83.1  
LJGI gnl|LJGI|TC73764 991 99.8 99.8 similar to UniRef100_A7PHY0 Cluster: Chromosome chr13 scaffold_17, whole genome shotgun sequence; n=2; Vitis vinifera|Rep: Chromosome chr13 scaffold_17, whole genome shotgun sequence - Vitis vinifera (Grape), partial (48%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj5g3v2219240.1 length: 284 aa.
IPR000504 RNA recognition motif domain
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMPfam PF00076 RRM_1 4e-22 9-78
HMMSmart SM00360 RNA 3.9e-29 8-81
ProfileScan PS50102 RRM 19.997 7-85
IPR001878 Zinc finger, CCHC-type
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0008270 zinc ion binding    
Gene3D G3DSA:4.10.60.10 no description 6.9e-09 114-141
HMMPfam PF00098 zf-CCHC 2.4e-08 120-134
HMMSmart SM00343 zinc 1.9e-05 119-135
ProfileScan PS50158 ZF_CCHC 11.383 120-134
IPR012677 Nucleotide-binding, alpha-beta plait
Molecular Function GO:0000166 nucleotide binding    
Gene3D G3DSA:3.30.70.330 no description 9e-31 4-101
no_ID  
HMMPanther PTHR24012 FAMILY 4.6e-50 1-279
HMMPanther PTHR24012:SF163PREDICTED: SIMILAR 4.6e-50 1-279
Seg seg seg NA 95-116
137-193
234-250
256-275
superfamily SSF54928 RNA-binding 2.5e-31 4-117
Wolf-PSORT
Lj5g3v2219240.1	nucl 10, cyto 2, mito 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj5g3v2219240.1